Project name: E8bM5

Status: done

Started: 2025-10-08 10:01:05
Settings
Chain sequence(s) A: ALVANASLTSGASTLQQFTAKSENSSQYSFPCAYYLQQSLSDGLIVSSLYLKLDRAQFTNMPTGANYQNARYFTFWVGAGTSFNLSTLTEPTITPNTTQWNAFAPALDYSGAPPFIYDASSVVTIYFEPTSGRLESYKPSLTDNWSQTYNPGTVTLCVKTVRVQLRSQGTFSTLVCYNFRCQNTGIFNNNATAGTMTLGPIKFSCPALSTANAP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-2.3386
Maximal score value
2.5241
Average score
-0.4102
Total score value
-87.7725

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 1.2771
2 L A 2.0883
3 V A 1.7505
4 A A 0.3478
5 N A -1.0990
6 A A 0.0000
7 S A -0.6585
8 L A 0.0000
9 T A -0.6449
10 S A 0.0000
11 G A -0.8379
12 A A -0.5803
13 S A -0.5528
14 T A -0.7889
15 L A 0.0000
16 Q A -1.8269
17 Q A -1.7151
18 F A -0.9119
19 T A -0.6057
20 A A 0.0000
21 K A -0.6030
22 S A 0.0000
23 E A 0.0000
24 N A 0.0000
25 S A -0.7724
26 S A 0.0000
27 Q A -0.4554
28 Y A 0.0000
29 S A -0.6223
30 F A 0.0000
31 P A -0.6303
32 C A 0.0000
33 A A 0.0000
34 Y A 0.0000
35 Y A -0.2827
36 L A 0.0000
37 Q A -0.7008
38 Q A 0.0000
39 S A -0.2667
40 L A 0.0000
41 S A -0.8643
42 D A -1.4143
43 G A -0.4956
44 L A 0.2456
45 I A 0.0000
46 V A 0.8902
47 S A 0.0000
48 S A -0.5563
49 L A 0.0000
50 Y A -0.0003
51 L A 0.0000
52 K A -0.5228
53 L A 0.0000
54 D A -0.7251
55 R A -0.8640
56 A A -0.4498
57 Q A -0.6932
58 F A 0.0000
59 T A -0.8845
60 N A -1.3262
61 M A -0.6781
62 P A -0.5872
63 T A -0.8645
64 G A -0.8397
65 A A -1.0408
66 N A -1.5419
67 Y A -0.9808
68 Q A -1.4348
69 N A -2.0088
70 A A 0.0000
71 R A -1.5223
72 Y A -0.7782
73 F A 0.0000
74 T A 0.0000
75 F A 0.0000
76 W A 0.0000
77 V A 0.0000
78 G A -0.3724
79 A A -0.9829
80 G A -1.1553
81 T A -0.7904
82 S A -0.2538
83 F A 0.0000
84 N A -0.6526
85 L A 0.0000
86 S A 0.0000
87 T A -0.5931
88 L A 0.0000
89 T A -1.0887
90 E A -1.9745
91 P A -1.2542
92 T A -1.0106
93 I A 0.0000
94 T A -1.0438
95 P A -1.2104
96 N A -1.6745
97 T A -1.0488
98 T A -1.4876
99 Q A -1.9222
100 W A 0.0000
101 N A -1.6114
102 A A -0.8012
103 F A 0.0000
104 A A -0.2933
105 P A 0.0000
106 A A 0.0000
107 L A 0.5464
108 D A 0.2134
109 Y A 1.0095
110 S A 0.0823
111 G A -0.2742
112 A A -0.2929
113 P A -0.3505
114 P A -0.0273
115 F A 0.4623
116 I A 0.9252
117 Y A 1.1338
118 D A 0.4134
119 A A 0.5104
120 S A 0.9523
121 S A 1.0207
122 V A 2.3547
123 V A 2.5241
124 T A 1.1812
125 I A 0.0000
126 Y A 0.1270
127 F A 0.0450
128 E A -0.7855
129 P A 0.0000
130 T A -0.4189
131 S A -0.7577
132 G A -1.0794
133 R A -1.4623
134 L A 0.0881
135 E A -0.3043
136 S A -0.3606
137 Y A -0.8819
138 K A -1.7255
139 P A 0.0000
140 S A -0.5562
141 L A -0.9297
142 T A -1.2691
143 D A -2.3386
144 N A -1.9621
145 W A 0.0000
146 S A -1.4792
147 Q A -1.9134
148 T A -1.1720
149 Y A -1.2651
150 N A -1.5443
151 P A 0.0000
152 G A -1.5114
153 T A -1.3843
154 V A 0.0000
155 T A -0.5772
156 L A 0.0000
157 C A 0.0000
158 V A 0.0000
159 K A -0.6883
160 T A -0.1241
161 V A 0.0000
162 R A 0.1086
163 V A 0.0000
164 Q A -0.0710
165 L A -0.5462
166 R A -1.9237
167 S A -1.6113
168 Q A -1.9003
169 G A -1.4735
170 T A -0.5102
171 F A 0.6477
172 S A 0.3696
173 T A 0.0000
174 L A 0.0000
175 V A 0.0000
176 C A 0.0000
177 Y A 0.0000
178 N A 0.0000
179 F A 0.0000
180 R A -0.9469
181 C A 0.0000
182 Q A -2.1117
183 N A -2.3044
184 T A -1.6443
185 G A 0.0000
186 I A 0.0000
187 F A 0.0000
188 N A -1.1639
189 N A -1.2640
190 N A -1.5971
191 A A 0.0000
192 T A -0.8846
193 A A -1.0213
194 G A 0.0000
195 T A -0.7267
196 M A 0.0000
197 T A -0.3706
198 L A 0.0000
199 G A -0.5865
200 P A -0.5991
201 I A 0.0000
202 K A -1.4886
203 F A -0.5709
204 S A 0.1891
205 C A 0.0000
206 P A 0.1029
207 A A 0.0000
208 L A 0.3265
209 S A 0.2742
210 T A -0.0709
211 A A -0.0612
212 N A -0.1233
213 A A -0.0454
214 P A -0.0761
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018