Project name: GenX_V5_ED_Final

Status: done

Started: 2026-07-26 18:27:46
Settings
Chain sequence(s) A: GMAFLRFYKGGGGGGGFFFPPPPPPPKKKKKKKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHRRQVIASDLIIRHPYALTLFSVYWTDRATRRVMRANKWHGGNQSVVMYNIQWPLGIVAVHPSKQPNSVNPCAFSRCSHLCLLSSQGPHFYSCVCPSGWSLSPDLLNCLRDDQPFLITVRQHIIFGISLNPEVNDAMVPIAGIQNGLDVEFDDAEQYIYWVENPGEIHRDRWHQQDSICFYIYGGAFYEPGLRLDFKKPLFYASSLTDSLR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:42)
Show buried residues

Minimal score value
-4.6476
Maximal score value
3.5595
Average score
-0.3027
Total score value
-84.1508

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.1429
2 M A 1.4625
3 A A 1.3828
4 F A 2.2897
5 L A 1.8822
6 R A 0.1930
7 F A 1.6108
8 Y A 0.9603
9 K A -1.0819
10 G A -0.6162
11 G A -1.1593
12 G A -1.3516
13 G A -1.2438
14 G A -1.1940
15 G A -0.3615
16 G A 0.8052
17 F A 2.9909
18 F A 3.5595
19 F A 3.0793
20 P A 1.0970
21 P A 0.1479
22 P A -0.3764
23 P A -0.6934
24 P A -0.9247
25 P A -1.3654
26 P A -2.0136
27 K A -3.4211
28 K A -4.4041
29 K A -4.5506
30 K A -4.6476
31 K A -4.2868
32 K A -3.8031
33 K A -1.9037
34 I A 0.2092
35 F A 1.4592
36 W A 1.5915
37 P A 1.2300
38 C A 1.0658
39 G A 0.5273
40 L A 0.7206
41 T A 0.0000
42 I A 0.2655
43 D A 0.0000
44 Y A -0.1921
45 P A -0.7039
46 N A -1.4250
47 R A -1.9090
48 L A -1.1133
49 L A -0.1235
50 Y A 0.0000
51 F A 0.4227
52 M A 0.0000
53 D A 0.0000
54 S A 0.6909
55 Y A 1.4697
56 L A 0.7231
57 D A -0.3658
58 Y A 0.0000
59 M A 0.0000
60 D A 0.0000
61 F A 0.0000
62 C A -1.8751
63 D A -1.9418
64 Y A -0.5022
65 N A -1.7799
66 G A -1.7900
67 H A -2.4693
68 H A -2.4843
69 R A -2.6498
70 R A -2.7395
71 Q A -1.5592
72 V A 0.0000
73 I A 0.0000
74 A A -0.1951
75 S A -0.5043
76 D A -1.3573
77 L A 0.4442
78 I A -0.0142
79 I A 0.0000
80 R A -1.6271
81 H A -1.4017
82 P A 0.0000
83 Y A 0.7624
84 A A 0.8641
85 L A 0.0000
86 T A 0.0000
87 L A 0.0000
88 F A 2.0224
89 S A 0.5247
90 V A 0.0000
91 Y A 0.4775
92 W A 0.0000
93 T A 0.0000
94 D A 0.0000
95 R A -1.4007
96 A A -1.4321
97 T A -1.5402
98 R A -2.3783
99 R A -1.0089
100 V A 0.0000
101 M A 0.1077
102 R A -0.8306
103 A A 0.0000
104 N A -1.2299
105 K A -0.4072
106 W A -0.5507
107 H A -1.4361
108 G A 0.0000
109 G A -1.4697
110 N A -2.0345
111 Q A -1.2419
112 S A -0.2873
113 V A 1.3665
114 V A 1.5314
115 M A 1.1417
116 Y A 0.5830
117 N A -1.2434
118 I A -0.6546
119 Q A -1.1433
120 W A 0.2370
121 P A 0.0000
122 L A 1.2572
123 G A 0.8860
124 I A 1.4604
125 V A 2.4473
126 A A 2.0855
127 V A 2.0248
128 H A 0.5351
129 P A -0.8551
130 S A -0.3943
131 K A -0.4020
132 Q A -1.5743
133 P A -1.4027
134 N A -1.6628
135 S A -0.5670
136 V A 0.7691
137 N A 0.1464
138 P A 1.0625
139 C A 1.0955
140 A A 0.6845
141 F A 1.3710
142 S A 0.0116
143 R A -1.2613
144 C A -0.1108
145 S A -0.3635
146 H A -0.2633
147 L A 0.8423
148 C A 1.4775
149 L A 2.5503
150 L A 2.1829
151 S A 1.1441
152 S A 0.2857
153 Q A -0.9355
154 G A -0.8910
155 P A -0.7721
156 H A -0.4344
157 F A 1.1835
158 Y A 1.3021
159 S A 1.1528
160 C A 0.0000
161 V A 1.4511
162 C A 0.8780
163 P A 0.2430
164 S A -0.2000
165 G A -0.4266
166 W A -0.0565
167 S A 0.3376
168 L A 0.8249
169 S A 0.2842
170 P A -0.3068
171 D A -0.8906
172 L A 0.6695
173 L A -0.2124
174 N A -0.5443
175 C A 0.5489
176 L A 0.7764
177 R A -0.7026
178 D A -1.5183
179 D A -2.2598
180 Q A -1.3902
181 P A -0.0507
182 F A 1.4616
183 L A 2.6393
184 I A 1.6651
185 T A 0.6860
186 V A -0.8390
187 R A -2.5687
188 Q A -2.9766
189 H A -2.3792
190 I A -0.9150
191 I A 0.0000
192 F A 1.0234
193 G A 0.0000
194 I A 1.8683
195 S A 0.9957
196 L A 1.4265
197 N A -0.4644
198 P A -0.9274
199 E A -1.8362
200 V A -0.5339
201 N A -1.3340
202 D A -0.7352
203 A A 0.0000
204 M A 0.0000
205 V A 0.2720
206 P A 0.4429
207 I A 0.2509
208 A A -0.3939
209 G A -1.0508
210 I A 0.0000
211 Q A -2.4544
212 N A -2.3923
213 G A -1.8626
214 L A -1.0654
215 D A -1.2066
216 V A -0.5665
217 E A -1.0311
218 F A -0.9899
219 D A -1.5654
220 D A -2.2018
221 A A -1.4828
222 E A -2.7202
223 Q A -2.2755
224 Y A 0.0000
225 I A 0.0000
226 Y A 0.0000
227 W A 0.0000
228 V A 0.0000
229 E A 0.0000
230 N A -1.1388
231 P A -0.4751
232 G A 0.0000
233 E A 0.3638
234 I A 0.0000
235 H A 0.9663
236 R A -0.3407
237 D A 0.0000
238 R A -3.1699
239 W A -2.1255
240 H A -1.9406
241 Q A -2.9071
242 Q A -2.7739
243 D A -2.5210
244 S A -0.7803
245 I A 1.4323
246 C A 1.8419
247 F A 2.2357
248 Y A 2.1197
249 I A 2.2649
250 Y A 0.8998
251 G A 0.0415
252 G A -0.0070
253 A A -0.2072
254 F A 0.0000
255 Y A 0.7159
256 E A -0.9773
257 P A 0.0000
258 G A -0.9367
259 L A 0.0000
260 R A -1.6690
261 L A -0.8246
262 D A -0.8183
263 F A 0.0153
264 K A -1.7102
265 K A -2.0458
266 P A -1.1127
267 L A -0.9716
268 F A -0.7200
269 Y A -1.0920
270 A A 0.0000
271 S A -0.8446
272 S A -0.0302
273 L A 0.9693
274 T A 0.0556
275 D A -1.4049
276 S A -1.0252
277 L A -0.8866
278 R A -1.7322
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Laboratory of Theory of Biopolymers 2018