| Chain sequence(s) |
A: GFAWNVCVYRNGVRVCHRRAN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:24)
[INFO] Main: Simulation completed successfully. (00:00:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.5763 | |
| 2 | F | A | 1.0794 | |
| 3 | A | A | 0.0887 | |
| 4 | W | A | -0.2735 | |
| 5 | N | A | -1.2709 | |
| 6 | V | A | -0.5423 | |
| 7 | C | A | 0.2442 | |
| 8 | V | A | 0.5521 | |
| 9 | Y | A | 0.3309 | |
| 10 | R | A | -1.5386 | |
| 11 | N | A | -1.6910 | |
| 12 | G | A | -0.7034 | |
| 13 | V | A | 0.4960 | |
| 14 | R | A | -0.3460 | |
| 15 | V | A | 0.3656 | |
| 16 | C | A | 0.2041 | |
| 17 | H | A | -1.4623 | |
| 18 | R | A | -2.4706 | |
| 19 | R | A | -1.9287 | |
| 20 | A | A | -1.1792 | |
| 21 | N | A | -1.4594 |