Project name: 3BKY VHVL

Status: done

Started: 2026-03-30 05:20:10
Settings
Chain sequence(s) H: QAYLQQSGAELVRPGASVKMSCKASGYTFTSYNMHWVKQTPRQGLEWIGAIYPGNGDTSYNQKFKGKATLTVDKSSSTAYMQLSSLTSEDSAVYFCARVVYYSNSYWYFDVWGTGTTVTVS
L: QIVLSQSPAILSASPGEKVTMTCRASSSVSYMHWYQQKPGSSPKPWIYAPSNLASGVPARFSGSGSGTSYSLTISRVEAEDAATYYCQQWSFNPPTFGAGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-3.6674
Maximal score value
1.7434
Average score
-0.4781
Total score value
-108.5349

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.0060
2 A H -0.1111
3 Y H 0.4469
4 L H 0.0000
5 Q H -1.3249
6 Q H 0.0000
7 S H -0.8561
8 G H -0.5909
9 A H 0.0204
11 E H -0.1136
12 L H 0.9315
13 V H -0.2530
14 R H -1.8294
15 P H -1.4936
16 G H -1.1701
17 A H -0.9343
18 S H -0.9971
19 V H 0.0000
20 K H -1.2576
21 M H 0.0000
22 S H -0.6977
23 C H 0.0000
24 K H -1.2696
25 A H 0.0000
26 S H -0.5272
27 G H -0.5114
28 Y H -0.0936
29 T H -0.1102
30 F H 0.0000
35 T H -0.5208
36 S H -0.0581
37 Y H 0.3849
38 N H -0.0854
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.5718
45 T H 0.0000
46 P H -1.3177
47 R H -2.3561
48 Q H -1.8271
49 G H -1.1054
50 L H 0.0000
51 E H -0.7944
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 A H 0.0000
56 I H 0.0000
57 Y H -0.4557
58 P H 0.0000
59 G H -1.1361
62 N H -1.8862
63 G H -1.6872
64 D H -2.1422
65 T H -1.0116
66 S H -0.9003
67 Y H -1.2183
68 N H 0.0000
69 Q H -2.8993
70 K H -2.8808
71 F H 0.0000
72 K H -2.8670
74 G H -1.8576
75 K H -1.6178
76 A H 0.0000
77 T H -0.7565
78 L H 0.0000
79 T H -0.3994
80 V H -0.4828
81 D H -1.2147
82 K H -1.6994
83 S H -0.9692
84 S H -0.8719
85 S H -0.9923
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2225
89 M H 0.0000
90 Q H -0.9943
91 L H 0.0000
92 S H -0.8122
93 S H -0.8897
94 L H 0.0000
95 T H -1.0596
96 S H -1.1145
97 E H -1.1661
98 D H 0.0000
99 S H -0.2672
100 A H 0.0000
101 V H 0.4138
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.1600
107 V H 0.0000
108 V H 0.0000
109 Y H 1.7434
110 Y H 1.2470
111 S H -0.0605
111A N H -0.9752
112A S H -0.1561
112 Y H 0.0000
113 W H 1.2757
114 Y H 0.8615
115 F H 0.0000
116 D H 0.0546
117 V H 0.2725
118 W H 0.0000
119 G H 0.0000
120 T H -0.2982
121 G H -0.2716
122 T H 0.0000
123 T H 0.1724
124 V H 0.0000
125 T H -0.0031
126 V H 0.0000
127 S H -0.5815
1 Q L -0.8107
2 I L 0.0000
3 V L 1.1637
4 L L 0.0000
5 S L -0.2279
6 Q L -0.1338
7 S L -0.0228
8 P L 0.2697
9 A L 0.5262
10 I L 1.1406
11 L L 0.2167
12 S L -0.7203
13 A L 0.0000
14 S L -2.2128
15 P L -2.3841
16 G L -2.5412
17 E L -3.5898
18 K L -3.3135
19 V L 0.0000
20 T L -0.4594
21 M L 0.0000
22 T L -0.4946
23 C L 0.0000
24 R L -1.1090
25 A L 0.0000
26 S L -0.1823
27 S L -0.1578
28 S L -0.3650
29 V L 0.0000
37 S L 0.0097
38 Y L 0.2520
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.8679
45 K L -1.2031
46 P L -0.7254
47 G L -0.7704
48 S L -0.6922
49 S L -0.4442
50 P L 0.0000
51 K L -0.7936
52 P L -0.3587
53 W L 0.0000
54 I L 0.0000
55 Y L 0.1857
56 A L -0.1106
57 P L -0.2762
65 S L -0.4674
66 N L -0.5416
67 L L 0.0173
68 A L -0.2100
69 S L -0.4003
70 G L -0.4331
71 V L -0.2445
72 P L -0.1993
74 A L -0.1689
75 R L -1.3278
76 F L 0.0000
77 S L -0.4164
78 G L -0.4367
79 S L -0.6381
80 G L -0.8617
83 S L -0.7163
84 G L -0.6541
85 T L -0.7799
86 S L -0.9496
87 Y L 0.0000
88 S L -0.5150
89 L L 0.0000
90 T L -0.8112
91 I L 0.0000
92 S L -2.3598
93 R L -3.6674
94 V L 0.0000
95 E L -2.8805
96 A L -1.9301
97 E L -2.3003
98 D L 0.0000
99 A L -1.6105
100 A L 0.0000
101 T L -0.8303
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.6181
108 S L 0.7269
109 F L 1.0211
114 N L -0.7291
115 P L -0.9871
116 P L 0.0000
117 T L 0.1277
118 F L 0.0000
119 G L 0.0000
120 A L -0.4579
121 G L 0.0000
122 T L 0.0000
123 K L -1.2277
124 L L 0.0000
125 E L -1.6498
126 L L -1.7669
127 K L -2.0555
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Laboratory of Theory of Biopolymers 2018