| Chain sequence(s) |
A: GGCCSHPACAAAAGNSNMCGGCCSHPACAAAAGNSNMC
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:10)
[INFO] Main: Simulation completed successfully. (00:00:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2993 | |
| 2 | G | A | -0.0395 | |
| 3 | C | A | 0.0000 | |
| 4 | C | A | 0.4131 | |
| 5 | S | A | -0.1789 | |
| 6 | H | A | -0.3810 | |
| 7 | P | A | -0.3310 | |
| 8 | A | A | -0.1644 | |
| 9 | C | A | 0.0000 | |
| 10 | A | A | -0.2751 | |
| 11 | A | A | -0.3127 | |
| 12 | A | A | -0.2335 | |
| 13 | A | A | 0.0000 | |
| 14 | G | A | -1.0864 | |
| 15 | N | A | -1.7154 | |
| 16 | S | A | -1.1743 | |
| 17 | N | A | -1.4643 | |
| 18 | M | A | -0.3141 | |
| 19 | C | A | -0.0973 | |
| 20 | G | A | -0.3029 | |
| 21 | G | A | -0.2917 | |
| 22 | C | A | 0.0000 | |
| 23 | C | A | 0.2725 | |
| 24 | S | A | -0.4057 | |
| 25 | H | A | -0.6230 | |
| 26 | P | A | -0.4321 | |
| 27 | A | A | -0.2268 | |
| 28 | C | A | 0.0000 | |
| 29 | A | A | -0.2875 | |
| 30 | A | A | -0.3593 | |
| 31 | A | A | -0.2167 | |
| 32 | A | A | 0.0000 | |
| 33 | G | A | -1.0307 | |
| 34 | N | A | -1.6708 | |
| 35 | S | A | -1.0381 | |
| 36 | N | A | -1.2732 | |
| 37 | M | A | -0.0090 | |
| 38 | C | A | 0.1796 |