Project name: query_structure

Status: done

Started: 2026-03-16 23:21:00
Settings
Chain sequence(s) A: GGCCSHPACAAAAGNSNMCGGCCSHPACAAAAGNSNMC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-1.7154
Maximal score value
0.4131
Average score
-0.4045
Total score value
-15.3695

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2993
2 G A -0.0395
3 C A 0.0000
4 C A 0.4131
5 S A -0.1789
6 H A -0.3810
7 P A -0.3310
8 A A -0.1644
9 C A 0.0000
10 A A -0.2751
11 A A -0.3127
12 A A -0.2335
13 A A 0.0000
14 G A -1.0864
15 N A -1.7154
16 S A -1.1743
17 N A -1.4643
18 M A -0.3141
19 C A -0.0973
20 G A -0.3029
21 G A -0.2917
22 C A 0.0000
23 C A 0.2725
24 S A -0.4057
25 H A -0.6230
26 P A -0.4321
27 A A -0.2268
28 C A 0.0000
29 A A -0.2875
30 A A -0.3593
31 A A -0.2167
32 A A 0.0000
33 G A -1.0307
34 N A -1.6708
35 S A -1.0381
36 N A -1.2732
37 M A -0.0090
38 C A 0.1796
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Laboratory of Theory of Biopolymers 2018