| Chain sequence(s) |
A: GHKGHKS
C: GHKGHKS B: GHKGHKS D: GHKGHKS input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:03)
[INFO] Main: Simulation completed successfully. (00:01:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.3488 | |
| 2 | H | A | -3.4078 | |
| 3 | K | A | -3.9987 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -3.2030 | |
| 6 | K | A | -2.6080 | |
| 7 | S | A | -1.3805 | |
| 1 | G | B | -2.3763 | |
| 2 | H | B | -3.7263 | |
| 3 | K | B | -4.1071 | |
| 4 | G | B | -3.8214 | |
| 5 | H | B | -3.2544 | |
| 6 | K | B | -3.0827 | |
| 7 | S | B | -1.5929 | |
| 1 | G | C | -2.2723 | |
| 2 | H | C | -3.6783 | |
| 3 | K | C | -4.1537 | |
| 4 | G | C | -3.8483 | |
| 5 | H | C | -3.1770 | |
| 6 | K | C | -3.2932 | |
| 7 | S | C | -1.6650 | |
| 1 | G | D | -2.4219 | |
| 2 | H | D | -3.3368 | |
| 3 | K | D | -4.1957 | |
| 4 | G | D | -3.9057 | |
| 5 | H | D | -3.6807 | |
| 6 | K | D | -2.9444 | |
| 7 | S | D | -1.6699 |