Project name: Nb_I [mutate: VQ5A, EV6A] [mutate: QE5A] [mutate: EV5A, VE6A]

Status: done

Started: 2025-07-13 10:40:49
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Chain sequence(s) A: QVQLEVSGGGLAQAGGSLRLSCVVSGRTFSPYTIGWFSQRPGKEREWVATIIGSDRSTDLDGDTYYADSVRGRFTISRNDAKNTVSLQMNSLKPEDSAVYYCALTAKGYVFTDNEYDYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues EV5A,VE6A
Energy difference between WT (input) and mutated protein (by FoldX) -2.89896 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:34)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:48)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:22)
Show buried residues

Minimal score value
-3.9313
Maximal score value
1.8068
Average score
-0.8543
Total score value
-110.2006

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7910
2 V A 0.0000
3 Q A -1.2594
4 L A 0.0000
5 V A 1.3672 mutated: EV5A
6 E A 0.0000 mutated: VE6A
7 S A -0.3660
8 G A -1.1707
9 G A -0.8831
10 G A -0.1724
11 L A 0.8824
12 A A -0.1819
13 Q A -1.3154
14 A A -1.4071
15 G A -1.3066
16 G A -0.9246
17 S A -1.1089
18 L A -1.1084
19 R A -2.2555
20 L A 0.0000
21 S A -0.2551
22 C A 0.0000
23 V A 0.7470
24 V A 0.0000
25 S A -1.0822
26 G A -1.6378
27 R A -1.5151
28 T A -0.7362
29 F A 0.0000
30 S A -1.2009
31 P A -0.9639
32 Y A -0.2733
33 T A 0.0000
34 I A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 S A -1.6613
39 Q A -2.7172
40 R A -3.2719
41 P A -1.9964
42 G A -2.2603
43 K A -3.8706
44 E A -3.9313
45 R A -3.2300
46 E A -3.1932
47 W A -1.3533
48 V A 0.0000
49 A A 0.0000
50 T A 0.0000
51 I A 0.0000
52 I A 0.0000
53 G A 0.0000
54 S A -1.8072
55 D A -2.2528
56 R A -1.6386
57 S A -1.2412
58 T A -1.4902
59 D A -2.0762
60 L A -1.1912
61 D A -2.0990
62 G A -1.4232
63 D A -1.0976
64 T A -0.1553
65 Y A 0.1197
66 Y A -0.5608
67 A A -1.4039
68 D A -2.4922
69 S A -1.7771
70 V A 0.0000
71 R A -2.7210
72 G A -1.8376
73 R A -1.6872
74 F A 0.0000
75 T A -0.8324
76 I A 0.0000
77 S A -0.6038
78 R A -1.2126
79 N A -1.7068
80 D A -1.8740
81 A A -1.5092
82 K A -2.2679
83 N A -1.7605
84 T A -0.7824
85 V A 0.0000
86 S A 0.0000
87 L A 0.0000
88 Q A -1.3765
89 M A 0.0000
90 N A -1.3777
91 S A -1.1377
92 L A 0.0000
93 K A -2.0230
94 P A -1.5946
95 E A -2.0310
96 D A 0.0000
97 S A -1.0886
98 A A 0.0000
99 V A -0.7690
100 Y A 0.0000
101 Y A -0.1789
102 C A 0.0000
103 A A 0.0000
104 L A 0.0000
105 T A 0.0000
106 A A -1.1143
107 K A -1.4749
108 G A 0.0000
109 Y A 1.3596
110 V A 0.9952
111 F A 1.8068
112 T A -0.1186
113 D A -2.2998
114 N A -2.0962
115 E A 0.0000
116 Y A 0.0000
117 D A -2.1815
118 Y A -0.7545
119 W A -0.1081
120 G A 0.0335
121 Q A -0.8108
122 G A 0.0000
123 T A 0.0000
124 Q A -1.1408
125 V A 0.0000
126 T A -0.3096
127 V A 0.0000
128 S A -0.7729
129 S A -0.8501
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Laboratory of Theory of Biopolymers 2018