Chain sequence(s) |
A: QVQLEVSGGGLAQAGGSLRLSCVVSGRTFSPYTIGWFSQRPGKEREWVATIIGSDRSTDLDGDTYYADSVRGRFTISRNDAKNTVSLQMNSLKPEDSAVYYCALTAKGYVFTDNEYDYWGQGTQVTVSS
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | EV5A,VE6A |
Energy difference between WT (input) and mutated protein (by FoldX) | -2.89896 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:34) [INFO] FoldX: Starting FoldX energy minimalization (00:00:48) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:21) [INFO] Main: Simulation completed successfully. (00:01:22) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | Q | A | -1.7910 | |
2 | V | A | 0.0000 | |
3 | Q | A | -1.2594 | |
4 | L | A | 0.0000 | |
5 | V | A | 1.3672 | mutated: EV5A |
6 | E | A | 0.0000 | mutated: VE6A |
7 | S | A | -0.3660 | |
8 | G | A | -1.1707 | |
9 | G | A | -0.8831 | |
10 | G | A | -0.1724 | |
11 | L | A | 0.8824 | |
12 | A | A | -0.1819 | |
13 | Q | A | -1.3154 | |
14 | A | A | -1.4071 | |
15 | G | A | -1.3066 | |
16 | G | A | -0.9246 | |
17 | S | A | -1.1089 | |
18 | L | A | -1.1084 | |
19 | R | A | -2.2555 | |
20 | L | A | 0.0000 | |
21 | S | A | -0.2551 | |
22 | C | A | 0.0000 | |
23 | V | A | 0.7470 | |
24 | V | A | 0.0000 | |
25 | S | A | -1.0822 | |
26 | G | A | -1.6378 | |
27 | R | A | -1.5151 | |
28 | T | A | -0.7362 | |
29 | F | A | 0.0000 | |
30 | S | A | -1.2009 | |
31 | P | A | -0.9639 | |
32 | Y | A | -0.2733 | |
33 | T | A | 0.0000 | |
34 | I | A | 0.0000 | |
35 | G | A | 0.0000 | |
36 | W | A | 0.0000 | |
37 | F | A | 0.0000 | |
38 | S | A | -1.6613 | |
39 | Q | A | -2.7172 | |
40 | R | A | -3.2719 | |
41 | P | A | -1.9964 | |
42 | G | A | -2.2603 | |
43 | K | A | -3.8706 | |
44 | E | A | -3.9313 | |
45 | R | A | -3.2300 | |
46 | E | A | -3.1932 | |
47 | W | A | -1.3533 | |
48 | V | A | 0.0000 | |
49 | A | A | 0.0000 | |
50 | T | A | 0.0000 | |
51 | I | A | 0.0000 | |
52 | I | A | 0.0000 | |
53 | G | A | 0.0000 | |
54 | S | A | -1.8072 | |
55 | D | A | -2.2528 | |
56 | R | A | -1.6386 | |
57 | S | A | -1.2412 | |
58 | T | A | -1.4902 | |
59 | D | A | -2.0762 | |
60 | L | A | -1.1912 | |
61 | D | A | -2.0990 | |
62 | G | A | -1.4232 | |
63 | D | A | -1.0976 | |
64 | T | A | -0.1553 | |
65 | Y | A | 0.1197 | |
66 | Y | A | -0.5608 | |
67 | A | A | -1.4039 | |
68 | D | A | -2.4922 | |
69 | S | A | -1.7771 | |
70 | V | A | 0.0000 | |
71 | R | A | -2.7210 | |
72 | G | A | -1.8376 | |
73 | R | A | -1.6872 | |
74 | F | A | 0.0000 | |
75 | T | A | -0.8324 | |
76 | I | A | 0.0000 | |
77 | S | A | -0.6038 | |
78 | R | A | -1.2126 | |
79 | N | A | -1.7068 | |
80 | D | A | -1.8740 | |
81 | A | A | -1.5092 | |
82 | K | A | -2.2679 | |
83 | N | A | -1.7605 | |
84 | T | A | -0.7824 | |
85 | V | A | 0.0000 | |
86 | S | A | 0.0000 | |
87 | L | A | 0.0000 | |
88 | Q | A | -1.3765 | |
89 | M | A | 0.0000 | |
90 | N | A | -1.3777 | |
91 | S | A | -1.1377 | |
92 | L | A | 0.0000 | |
93 | K | A | -2.0230 | |
94 | P | A | -1.5946 | |
95 | E | A | -2.0310 | |
96 | D | A | 0.0000 | |
97 | S | A | -1.0886 | |
98 | A | A | 0.0000 | |
99 | V | A | -0.7690 | |
100 | Y | A | 0.0000 | |
101 | Y | A | -0.1789 | |
102 | C | A | 0.0000 | |
103 | A | A | 0.0000 | |
104 | L | A | 0.0000 | |
105 | T | A | 0.0000 | |
106 | A | A | -1.1143 | |
107 | K | A | -1.4749 | |
108 | G | A | 0.0000 | |
109 | Y | A | 1.3596 | |
110 | V | A | 0.9952 | |
111 | F | A | 1.8068 | |
112 | T | A | -0.1186 | |
113 | D | A | -2.2998 | |
114 | N | A | -2.0962 | |
115 | E | A | 0.0000 | |
116 | Y | A | 0.0000 | |
117 | D | A | -2.1815 | |
118 | Y | A | -0.7545 | |
119 | W | A | -0.1081 | |
120 | G | A | 0.0335 | |
121 | Q | A | -0.8108 | |
122 | G | A | 0.0000 | |
123 | T | A | 0.0000 | |
124 | Q | A | -1.1408 | |
125 | V | A | 0.0000 | |
126 | T | A | -0.3096 | |
127 | V | A | 0.0000 | |
128 | S | A | -0.7729 | |
129 | S | A | -0.8501 |