Project name: ecd_151_1st

Status: done

Started: 2024-06-11 14:09:07
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLNKIMKALGCTLEESKIKEVLEKPKYINLALEAQFTIMPKTALELAKVFRLKNIEALAILVCGCSPPGNLSNLFSLKLKGDPNLSLVMTTCSTKCAREKMPELLEKYSRGIYDGDLKDKVPYKGIEISLELVLKPCTEGIELKSKRPQLLRKELKKLEEEIEKLSEEVTKLSKENVGKSIMFAMTPKILETSSLMPKLGFEEGYKISKEACLNGRCRRTVSMETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMENQLKEGEKIVKEEKEKEKEEE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:01)
Show buried residues

Minimal score value
-6.6672
Maximal score value
1.7111
Average score
-1.2641
Total score value
-381.7463

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.9988
2 F A 0.1266
3 T A -0.1512
4 L A -0.0465
5 P A -0.1872
6 P A -1.0475
7 N A -2.0655
8 F A -1.1714
9 G A -1.3772
10 K A -2.2740
11 R A -1.6867
12 P A -1.0097
13 T A -0.7976
14 D A -0.7513
15 L A 0.4456
16 E A -0.3638
17 L A 0.0242
18 S A 0.8937
19 V A 1.6153
20 K A 0.2769
21 L A 0.8050
22 V A 1.0038
23 E A -0.5730
24 M A -0.6371
25 L A 0.1032
26 N A -0.9208
27 K A -1.3606
28 I A 0.0000
29 M A 0.0000
30 K A -1.2152
31 A A -1.0945
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.3937
36 L A 0.0000
37 E A -2.6110
38 E A -2.6990
39 S A -2.3329
40 K A -2.5876
41 I A -2.2581
42 K A -3.4806
43 E A -3.6943
44 V A 0.0000
45 L A -1.5862
46 E A -3.1150
47 K A -2.7800
48 P A -1.6787
49 K A -1.7986
50 Y A -1.0649
51 I A -0.8732
52 N A -1.7992
53 L A 0.0000
54 A A 0.0000
55 L A -0.6487
56 E A -1.3452
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 T A -0.7875
61 I A -0.6723
62 M A 0.0000
63 P A 0.0000
64 K A -2.0207
65 T A 0.0000
66 A A 0.0000
67 L A -1.3418
68 E A -2.4321
69 L A 0.0000
70 A A 0.0000
71 K A -2.1809
72 V A -0.0303
73 F A -1.1749
74 R A -2.6074
75 L A -1.9833
76 K A -2.6625
77 N A -1.9521
78 I A -0.3622
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 P A 0.0000
92 G A 0.0000
93 N A -0.0995
94 L A 0.2665
95 S A 0.0000
96 N A 0.0000
97 L A 0.1273
98 F A 0.0000
99 S A 0.0000
100 L A -0.8694
101 K A -1.8608
102 L A 0.0000
103 K A -2.4532
104 G A 0.0000
105 D A 0.0000
106 P A -0.6590
107 N A -1.0123
108 L A 0.0000
109 S A 0.0000
110 L A 0.0000
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A -0.3059
115 C A -0.0321
116 S A 0.0000
117 T A 0.0000
118 K A -1.8059
119 C A -1.3052
120 A A 0.0000
121 R A -2.8586
122 E A -3.1880
123 K A -2.5306
124 M A 0.0000
125 P A 0.0000
126 E A -3.2858
127 L A 0.0000
128 L A 0.0000
129 E A -3.9899
130 K A -2.7592
131 Y A -1.6870
132 S A 0.0000
133 R A -3.0547
134 G A -1.6800
135 I A -1.2067
136 Y A -1.6712
137 D A -2.4738
138 G A -2.5428
139 D A -3.7135
140 L A 0.0000
141 K A -3.9541
142 D A -3.0175
143 K A -1.6775
144 V A 0.0000
145 P A -0.8504
146 Y A -0.8732
147 K A -1.7312
148 G A -1.1446
149 I A 0.0000
150 E A -2.3696
151 I A -0.6115
152 S A -0.8969
153 L A -1.4481
154 E A -2.0759
155 L A -0.9267
156 V A 0.0000
157 L A -1.1525
158 K A -2.5515
159 P A 0.0000
160 C A 0.0000
161 T A -1.9796
162 E A -2.8734
163 G A 0.0000
164 I A -2.3029
165 E A -3.3752
166 L A -2.6202
167 K A -2.6722
168 S A -2.8196
169 K A -3.2928
170 R A -3.2461
171 P A -2.5872
172 Q A -2.3700
173 L A -1.6403
174 L A -2.3772
175 R A -3.2621
176 K A -3.3516
177 E A -2.9714
178 L A -3.1047
179 K A -4.6407
180 K A -4.6334
181 L A 0.0000
182 E A -4.7921
183 E A -5.1417
184 E A -4.3453
185 I A -3.8423
186 E A -4.4635
187 K A -4.3093
188 L A -3.1471
189 S A -2.7646
190 E A -3.6295
191 E A -3.1077
192 V A -2.1244
193 T A -2.3136
194 K A -3.2933
195 L A -2.5408
196 S A -2.1439
197 K A -3.3245
198 E A -3.1939
199 N A 0.0000
200 V A -1.1745
201 G A -2.0522
202 K A -1.8515
203 S A -0.3239
204 I A 0.0000
205 M A 0.8195
206 F A 1.7111
207 A A 0.9621
208 M A 0.0000
209 T A -0.1404
210 P A -0.6202
211 K A -1.3504
212 I A 0.0000
213 L A -0.3352
214 E A -1.4571
215 T A 0.0000
216 S A 0.0000
217 S A -0.8719
218 L A -0.1488
219 M A 0.0000
220 P A 0.0000
221 K A -1.0222
222 L A -0.4644
223 G A 0.0000
224 F A 0.0000
225 E A -2.2355
226 E A -1.8491
227 G A 0.0000
228 Y A -1.5028
229 K A -2.7923
230 I A -1.9239
231 S A 0.0000
232 K A -3.0106
233 E A -2.6172
234 A A -1.4795
235 C A -0.9775
236 L A 0.0000
237 N A -2.1919
238 G A -2.1736
239 R A -2.8340
240 C A 0.0000
241 R A -1.9551
242 R A -1.6668
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 M A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -1.1506
255 L A 0.0000
256 C A 0.0000
257 S A -0.5003
258 T A -0.4853
259 I A 0.0000
260 L A 0.0000
261 N A -0.6864
262 V A 0.4397
263 A A 0.0000
264 F A 0.0000
265 P A -0.3947
266 P A -0.6514
267 E A -1.3166
268 V A 0.4737
269 I A 0.0000
270 G A -0.0765
271 P A 0.3543
272 L A 0.0000
273 F A 0.1705
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A -0.0651
278 L A -0.0992
279 Y A 0.0000
280 M A -0.6893
281 E A -1.8194
282 N A 0.0000
283 Q A 0.0000
284 L A -1.3127
285 K A -2.4432
286 E A -2.1331
287 G A 0.0000
288 E A -3.1019
289 K A -3.1769
290 I A -2.7100
291 V A -3.2752
292 K A -4.8345
293 E A -4.9326
294 E A -4.8657
295 K A -5.4889
296 E A -6.3100
297 K A -6.6236
298 E A -6.6672
299 K A -6.2085
300 E A -5.8587
301 E A -5.3815
302 E A -4.4749
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Laboratory of Theory of Biopolymers 2018