| Chain sequence(s) |
A: GSVIQYSDYELDESSPFAGGAAWIEGEYVPAAEARISLFDTGFGHSDLTYTVAHVWHGNIFRLKDHIDRVFDGAQKLRLQSPLTKAEVEDITKRCVSLSQLRESFVNITITRGYGARKGEKDLSKLTSQIYIYAIPYLWAFPPEEQIFGTSAIVPRHVRRAGRNTVDPTVKNYQWGDLTAASFEAKDRGARTAILLDADNCVAEGPGFNVVMVKDGKLSSPSRNALPGITRLTVMEMADEMGIEFTLRDITSRELYEADELIAVTTAGGITPITSLDGEPLGDGTPGPVTVAIRDRFWAMMDEPSSLVEAIEY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | LG165A,NQ236A,DQ194A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 5.07414 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:05:54)
[INFO] FoldX: Starting FoldX energy minimalization (00:05:58)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:17)
[INFO] Main: Simulation completed successfully. (00:09:20)
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:04)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:04)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:04)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:04)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:04)
[INFO] FoldX: Building mutant model (00:06:10)
[INFO] FoldX: Starting FoldX energy minimalization (00:07:12)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:10:38)
[INFO] Main: Simulation completed successfully. (00:10:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 28 | G | A | -0.4902 | |
| 29 | S | A | -0.0991 | |
| 30 | V | A | 0.6564 | |
| 31 | I | A | 0.1268 | |
| 32 | Q | A | -0.7593 | |
| 33 | Y | A | 0.9668 | |
| 34 | S | A | -0.1520 | |
| 35 | D | A | -1.6761 | |
| 36 | Y | A | -0.0078 | |
| 37 | E | A | -1.6391 | |
| 38 | L | A | -0.3307 | |
| 39 | D | A | -2.0637 | |
| 40 | E | A | -2.1854 | |
| 41 | S | A | -0.5511 | |
| 42 | S | A | -0.1767 | |
| 43 | P | A | -0.1986 | |
| 44 | F | A | 0.3513 | |
| 45 | A | A | 0.0549 | |
| 46 | G | A | -0.1372 | |
| 47 | G | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | W | A | 0.2018 | |
| 51 | I | A | 0.1671 | |
| 52 | E | A | -0.4514 | |
| 53 | G | A | -0.8717 | |
| 54 | E | A | -1.8628 | |
| 55 | Y | A | -0.0404 | |
| 56 | V | A | 0.2978 | |
| 57 | P | A | 0.0688 | |
| 58 | A | A | 0.0297 | |
| 59 | A | A | -0.2671 | |
| 60 | E | A | -1.8055 | |
| 61 | A | A | -0.6453 | |
| 62 | R | A | -1.6475 | |
| 63 | I | A | 0.7228 | |
| 64 | S | A | 0.4247 | |
| 65 | L | A | 1.8929 | |
| 66 | F | A | 2.2239 | |
| 67 | D | A | 0.0000 | |
| 68 | T | A | -0.0796 | |
| 69 | G | A | 0.0000 | |
| 70 | F | A | 1.8571 | |
| 71 | G | A | -0.3000 | |
| 72 | H | A | -1.0835 | |
| 73 | S | A | -0.2774 | |
| 74 | D | A | -0.3110 | |
| 75 | L | A | 0.0000 | |
| 76 | T | A | 0.0000 | |
| 77 | Y | A | 0.0000 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | A | A | 0.0000 | |
| 81 | H | A | 0.0000 | |
| 82 | V | A | 0.0000 | |
| 83 | W | A | 0.0000 | |
| 84 | H | A | -0.2595 | |
| 85 | G | A | 0.0000 | |
| 86 | N | A | -0.1749 | |
| 87 | I | A | 0.0000 | |
| 88 | F | A | 0.0000 | |
| 89 | R | A | 0.0000 | |
| 90 | L | A | 0.0000 | |
| 91 | K | A | -1.4424 | |
| 92 | D | A | -1.0438 | |
| 93 | H | A | 0.0000 | |
| 94 | I | A | 0.0000 | |
| 95 | D | A | -1.2971 | |
| 96 | R | A | -0.4567 | |
| 97 | V | A | 0.0000 | |
| 98 | F | A | 0.0833 | |
| 99 | D | A | -1.7242 | |
| 100 | G | A | -0.3680 | |
| 101 | A | A | 0.0000 | |
| 102 | Q | A | -1.5538 | |
| 103 | K | A | -1.0848 | |
| 104 | L | A | -0.1849 | |
| 105 | R | A | -1.9088 | |
| 106 | L | A | 0.0000 | |
| 107 | Q | A | -1.2107 | |
| 108 | S | A | -0.3008 | |
| 109 | P | A | -0.0394 | |
| 110 | L | A | 0.2588 | |
| 111 | T | A | -0.1481 | |
| 112 | K | A | -0.7071 | |
| 113 | A | A | -0.2758 | |
| 114 | E | A | -1.1221 | |
| 115 | V | A | 0.0000 | |
| 116 | E | A | -0.5141 | |
| 117 | D | A | -1.8239 | |
| 118 | I | A | 0.0000 | |
| 119 | T | A | 0.0000 | |
| 120 | K | A | -0.6130 | |
| 121 | R | A | -1.4738 | |
| 122 | C | A | 0.0000 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | 0.0237 | |
| 125 | L | A | 0.3729 | |
| 126 | S | A | 0.0000 | |
| 127 | Q | A | -0.4033 | |
| 128 | L | A | 0.0000 | |
| 129 | R | A | -0.6573 | |
| 130 | E | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | F | A | 0.2959 | |
| 133 | V | A | 0.0000 | |
| 134 | N | A | 0.0000 | |
| 135 | I | A | 0.0000 | |
| 136 | T | A | 0.0000 | |
| 137 | I | A | 0.0000 | |
| 138 | T | A | 0.0000 | |
| 139 | R | A | -0.5985 | |
| 140 | G | A | 0.0000 | |
| 141 | Y | A | 0.2027 | |
| 142 | G | A | -0.1889 | |
| 143 | A | A | -0.0781 | |
| 144 | R | A | -0.7981 | |
| 145 | K | A | -1.8741 | |
| 146 | G | A | -0.8245 | |
| 147 | E | A | -0.6984 | |
| 148 | K | A | -2.0803 | |
| 149 | D | A | -1.8014 | |
| 150 | L | A | 1.1873 | |
| 151 | S | A | -0.2488 | |
| 152 | K | A | -1.6086 | |
| 153 | L | A | 0.3956 | |
| 154 | T | A | 0.1077 | |
| 155 | S | A | 0.0000 | |
| 156 | Q | A | 0.0000 | |
| 157 | I | A | 0.0000 | |
| 158 | Y | A | 0.1274 | |
| 159 | I | A | 0.0000 | |
| 160 | Y | A | 0.3907 | |
| 161 | A | A | 0.0000 | |
| 162 | I | A | 0.5976 | |
| 163 | P | A | -0.1253 | |
| 164 | Y | A | 0.0000 | |
| 165 | G | A | -0.1079 | mutated: LG165A |
| 166 | W | A | 0.2034 | |
| 167 | A | A | 0.0545 | |
| 168 | F | A | 0.0000 | |
| 169 | P | A | -0.1328 | |
| 170 | P | A | -0.4163 | |
| 171 | E | A | -1.8911 | |
| 172 | E | A | -0.4608 | |
| 173 | Q | A | 0.0000 | |
| 174 | I | A | 0.7178 | |
| 175 | F | A | 1.9599 | |
| 176 | G | A | 0.2479 | |
| 177 | T | A | 0.0000 | |
| 178 | S | A | -0.1051 | |
| 179 | A | A | 0.0000 | |
| 180 | I | A | 0.0000 | |
| 181 | V | A | 0.0000 | |
| 182 | P | A | 0.0000 | |
| 183 | R | A | -2.0238 | |
| 184 | H | A | -1.2753 | |
| 185 | V | A | -0.0839 | |
| 186 | R | A | -0.9269 | |
| 187 | R | A | 0.0000 | |
| 188 | A | A | -0.0149 | |
| 189 | G | A | -0.4908 | |
| 190 | R | A | -2.1350 | |
| 191 | N | A | -1.6222 | |
| 192 | T | A | -0.2270 | |
| 193 | V | A | 0.3754 | |
| 194 | Q | A | -0.4099 | mutated: DQ194A |
| 195 | P | A | 0.0000 | |
| 196 | T | A | -0.0286 | |
| 197 | V | A | 0.0000 | |
| 198 | K | A | -0.3251 | |
| 199 | N | A | -0.0558 | |
| 200 | Y | A | 0.5671 | |
| 201 | Q | A | -0.3705 | |
| 202 | W | A | 0.1686 | |
| 203 | G | A | -0.4450 | |
| 204 | D | A | -0.3171 | |
| 205 | L | A | 0.0000 | |
| 206 | T | A | -0.0281 | |
| 207 | A | A | 0.0144 | |
| 208 | A | A | 0.0000 | |
| 209 | S | A | 0.3094 | |
| 210 | F | A | 1.9330 | |
| 211 | E | A | 0.0000 | |
| 212 | A | A | 0.0000 | |
| 213 | K | A | -2.0266 | |
| 214 | D | A | -2.1851 | |
| 215 | R | A | -0.8848 | |
| 216 | G | A | -0.5518 | |
| 217 | A | A | -0.3334 | |
| 218 | R | A | -1.3980 | |
| 219 | T | A | 0.0000 | |
| 220 | A | A | 0.0000 | |
| 221 | I | A | 0.0000 | |
| 222 | L | A | 0.0000 | |
| 223 | L | A | 0.1555 | |
| 224 | D | A | 0.0000 | |
| 225 | A | A | -0.2637 | |
| 226 | D | A | -2.0036 | |
| 227 | N | A | -1.5739 | |
| 228 | C | A | -0.1532 | |
| 229 | V | A | 0.0000 | |
| 230 | A | A | 0.0000 | |
| 231 | E | A | 0.0000 | |
| 232 | G | A | 0.0000 | |
| 233 | P | A | -0.0746 | |
| 234 | G | A | -0.2221 | |
| 235 | F | A | 0.0000 | |
| 236 | Q | A | 0.0000 | mutated: NQ236A |
| 237 | V | A | 0.0000 | |
| 238 | V | A | 0.0000 | |
| 239 | M | A | 0.0000 | |
| 240 | V | A | 0.0000 | |
| 241 | K | A | -1.1706 | |
| 242 | D | A | -1.9844 | |
| 243 | G | A | -0.7188 | |
| 244 | K | A | -1.1396 | |
| 245 | L | A | 0.0000 | |
| 246 | S | A | 0.0000 | |
| 247 | S | A | 0.0000 | |
| 248 | P | A | 0.0000 | |
| 249 | S | A | -0.3614 | |
| 250 | R | A | -0.4370 | |
| 251 | N | A | -0.1998 | |
| 252 | A | A | 0.0000 | |
| 253 | L | A | 0.0000 | |
| 254 | P | A | -0.1079 | |
| 255 | G | A | 0.0000 | |
| 256 | I | A | 0.0000 | |
| 257 | T | A | 0.0000 | |
| 258 | R | A | 0.0000 | |
| 259 | L | A | 0.5049 | |
| 260 | T | A | 0.0000 | |
| 261 | V | A | 0.0000 | |
| 262 | M | A | 0.0000 | |
| 263 | E | A | -1.4246 | |
| 264 | M | A | 0.0000 | |
| 265 | A | A | 0.0000 | |
| 266 | D | A | -2.1314 | |
| 267 | E | A | -2.0689 | |
| 268 | M | A | -0.0352 | |
| 269 | G | A | -0.5334 | |
| 270 | I | A | -0.3307 | |
| 271 | E | A | -1.6529 | |
| 272 | F | A | 0.9074 | |
| 273 | T | A | 0.3401 | |
| 274 | L | A | 0.5732 | |
| 275 | R | A | -0.8938 | |
| 276 | D | A | -1.2539 | |
| 277 | I | A | 0.0000 | |
| 278 | T | A | -0.0598 | |
| 279 | S | A | -0.4851 | |
| 280 | R | A | -1.9511 | |
| 281 | E | A | -0.7839 | |
| 282 | L | A | 0.0000 | |
| 283 | Y | A | 0.9969 | |
| 284 | E | A | -1.5057 | |
| 285 | A | A | 0.0000 | |
| 286 | D | A | -1.1532 | |
| 287 | E | A | 0.0000 | |
| 288 | L | A | 0.0000 | |
| 289 | I | A | 0.0000 | |
| 290 | A | A | 0.0000 | |
| 291 | V | A | 0.0000 | |
| 292 | T | A | -0.0085 | |
| 293 | T | A | -0.0081 | |
| 294 | A | A | 0.0318 | |
| 295 | G | A | 0.0000 | |
| 296 | G | A | 0.0000 | |
| 297 | I | A | 0.0000 | |
| 298 | T | A | 0.0000 | |
| 299 | P | A | 0.0000 | |
| 300 | I | A | 0.0000 | |
| 301 | T | A | -0.0305 | |
| 302 | S | A | -0.0957 | |
| 303 | L | A | 0.0000 | |
| 304 | D | A | -1.3654 | |
| 305 | G | A | -0.9349 | |
| 306 | E | A | -1.4473 | |
| 307 | P | A | -0.5124 | |
| 308 | L | A | 0.0000 | |
| 309 | G | A | -0.9290 | |
| 310 | D | A | -1.9003 | |
| 311 | G | A | -0.5054 | |
| 312 | T | A | -0.1076 | |
| 313 | P | A | -0.0856 | |
| 314 | G | A | -0.1218 | |
| 315 | P | A | -0.2155 | |
| 316 | V | A | 0.2338 | |
| 317 | T | A | 0.0000 | |
| 318 | V | A | 0.5700 | |
| 319 | A | A | 0.1387 | |
| 320 | I | A | 0.0000 | |
| 321 | R | A | 0.0000 | |
| 322 | D | A | -0.6998 | |
| 323 | R | A | -0.5706 | |
| 324 | F | A | 0.0000 | |
| 325 | W | A | 0.0000 | |
| 326 | A | A | 0.0476 | |
| 327 | M | A | 0.1126 | |
| 328 | M | A | 0.0000 | |
| 329 | D | A | -2.0303 | |
| 330 | E | A | -1.7106 | |
| 331 | P | A | -0.5222 | |
| 332 | S | A | -0.2508 | |
| 333 | S | A | -0.1936 | |
| 334 | L | A | 0.2746 | |
| 335 | V | A | 0.0576 | |
| 336 | E | A | -1.1525 | |
| 337 | A | A | -0.1881 | |
| 338 | I | A | 0.0000 | |
| 339 | E | A | -1.6387 | |
| 340 | Y | A | 0.6507 |