Project name: Nb_C

Status: done

Started: 2025-07-15 11:44:48
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGELDAPFSKYSLGWFRQAPGQGLEAVAAIDAETGKTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAANPSSAYDPLSPSQYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-2.862
Maximal score value
1.7632
Average score
-0.7724
Total score value
-98.8613

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.2987
2 V A 0.0000
3 Q A -1.2301
4 L A 0.0000
5 V A 0.5057
6 E A 0.0000
7 S A -0.2593
8 G A -0.6470
9 G A 0.1143
10 G A 0.6210
11 L A 1.3014
12 V A 0.0000
13 Q A -1.4270
14 P A -1.6541
15 G A -1.4003
16 G A -0.9629
17 S A -1.3279
18 L A -1.1056
19 R A -2.2743
20 L A 0.0000
21 S A -0.6052
22 C A 0.0000
23 A A -0.3899
24 A A 0.0000
25 S A -1.2815
26 G A -2.0989
27 E A -2.8620
28 L A -1.9622
29 D A -2.5468
30 A A -1.5759
31 P A -1.4765
32 F A 0.0000
33 S A -1.7861
34 K A -2.5896
35 Y A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.7667
43 A A -1.0303
44 P A -0.9718
45 G A -1.2820
46 Q A -1.8703
47 G A -1.2773
48 L A -0.5137
49 E A -1.0911
50 A A -0.4049
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 D A 0.0000
56 A A -1.9936
57 E A -2.6395
58 T A -1.8381
59 G A -1.8031
60 K A -2.0239
61 T A -0.6585
62 Y A -0.3037
63 Y A -0.5620
64 A A -1.2555
65 D A -2.4312
66 S A -1.7562
67 V A 0.0000
68 K A -2.5420
69 G A -1.7288
70 R A -1.5228
71 F A 0.0000
72 T A -0.8924
73 I A 0.0000
74 S A -0.6241
75 R A -1.3304
76 D A -1.8771
77 N A -2.5245
78 S A -1.9192
79 K A -2.6192
80 N A -2.0534
81 T A -1.2891
82 L A 0.0000
83 Y A -0.7171
84 L A 0.0000
85 Q A -1.6054
86 M A 0.0000
87 N A -1.4088
88 S A -1.1690
89 L A 0.0000
90 R A -2.3592
91 A A -1.7730
92 E A -2.2698
93 D A 0.0000
94 T A -0.4194
95 A A 0.0000
96 V A 0.9073
97 Y A 0.0000
98 Y A 0.4026
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 N A -1.2485
103 P A -1.3610
104 S A -1.2719
105 S A -0.9375
106 A A 0.0000
107 Y A 0.5896
108 D A -0.6736
109 P A 0.0000
110 L A 0.0755
111 S A -0.3475
112 P A -0.6057
113 S A -0.8125
114 Q A -0.8322
115 Y A 0.0000
116 D A -1.7698
117 Y A -0.7892
118 W A -0.1408
119 G A -0.1742
120 Q A -0.8851
121 G A 0.0000
122 T A 0.6128
123 L A 1.7632
124 V A 0.0000
125 T A 0.3234
126 V A 0.0000
127 S A -0.8127
128 S A -0.5360
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Laboratory of Theory of Biopolymers 2018