Project name: A2D

Status: done

Started: 2026-07-20 05:51:54
Settings
Chain sequence(s) A: ASNPYVEPRGSGGSGDAARNPVKY
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:10)
Show buried residues

Minimal score value
-2.0656
Maximal score value
1.6763
Average score
-0.4801
Total score value
-11.5222

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.0198
2 S A -0.4349
3 N A -1.3580
4 P A -0.2429
5 Y A 1.5931
6 V A 1.6763
7 E A -1.5374
8 P A -0.9189
9 R A -1.9760
10 G A -0.8439
11 S A -0.3813
12 G A -0.5906
13 G A -0.5911
14 S A -0.3484
15 G A -0.6389
16 D A -1.8290
17 A A -0.2547
18 A A -0.2599
19 R A -2.0656
20 N A -1.6547
21 P A -0.1699
22 V A 1.4174
23 K A -1.1316
24 Y A 0.9989
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Laboratory of Theory of Biopolymers 2018