| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALAWRDSYSDPWFYYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:23)
[INFO] Main: Simulation completed successfully. (00:01:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.1089 | |
| 2 | V | A | -0.1358 | |
| 3 | Q | A | -1.4744 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.6700 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0703 | |
| 8 | G | A | -1.0179 | |
| 9 | G | A | -0.8172 | |
| 10 | G | A | -0.0636 | |
| 11 | L | A | 1.0731 | |
| 12 | V | A | 0.2243 | |
| 13 | Q | A | -0.9448 | |
| 14 | A | A | -1.2404 | |
| 15 | G | A | -1.1535 | |
| 16 | G | A | -0.8896 | |
| 17 | S | A | -1.2150 | |
| 18 | L | A | -0.9010 | |
| 19 | R | A | -2.1279 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8522 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1468 | |
| 24 | A | A | -0.6390 | |
| 25 | S | A | -0.5830 | |
| 26 | G | A | 0.0097 | |
| 27 | Y | A | 0.4133 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.3351 | |
| 30 | D | A | -1.5695 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | 0.2371 | |
| 33 | Y | A | 0.4755 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.6875 | |
| 38 | R | A | -1.6595 | |
| 39 | Q | A | -2.4611 | |
| 40 | A | A | -2.2373 | |
| 41 | P | A | -1.4585 | |
| 42 | G | A | -1.9798 | |
| 43 | K | A | -3.5583 | |
| 44 | E | A | -3.8470 | |
| 45 | R | A | -3.2835 | |
| 46 | E | A | -2.8681 | |
| 47 | F | A | -0.8289 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.4494 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.5589 | |
| 54 | G | A | -1.1208 | |
| 55 | T | A | -1.0607 | |
| 56 | N | A | -1.2864 | |
| 57 | T | A | -0.1177 | |
| 58 | Y | A | 0.6739 | |
| 59 | Y | A | -0.1795 | |
| 60 | A | A | -1.1626 | |
| 61 | D | A | -2.2738 | |
| 62 | S | A | -1.7729 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4693 | |
| 65 | G | A | -1.7859 | |
| 66 | R | A | -1.5222 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7166 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6599 | |
| 71 | R | A | -1.2913 | |
| 72 | D | A | -1.9088 | |
| 73 | N | A | -2.3157 | |
| 74 | A | A | -1.5161 | |
| 75 | K | A | -2.2706 | |
| 76 | N | A | -1.5219 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6519 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2323 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4381 | |
| 84 | S | A | -1.2810 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.3845 | |
| 87 | P | A | -1.7524 | |
| 88 | E | A | -2.3989 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9798 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.6886 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.6747 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | L | A | 1.2355 | |
| 99 | A | A | 0.6571 | |
| 100 | W | A | -0.2899 | |
| 101 | R | A | -1.8418 | |
| 102 | D | A | -2.1471 | |
| 103 | S | A | -1.0984 | |
| 104 | Y | A | 0.0976 | |
| 105 | S | A | -0.7720 | |
| 106 | D | A | -1.7349 | |
| 107 | P | A | -0.9595 | |
| 108 | W | A | 0.2371 | |
| 109 | F | A | 1.1853 | |
| 110 | Y | A | 2.1360 | |
| 111 | Y | A | 1.2057 | |
| 112 | W | A | 0.5677 | |
| 113 | G | A | -0.6491 | |
| 114 | Q | A | -1.4586 | |
| 115 | G | A | -1.0349 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.0917 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2808 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.5741 | |
| 122 | S | A | -0.7813 | |
| 123 | L | A | 0.0948 | |
| 124 | E | A | -1.2666 |