Project name: 3NTX

Status: done

Started: 2025-01-31 20:12:36
Settings
Chain sequence(s) A: QKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQQRRQLALMPEFHRPEMPDFTIHEYAPLIDSSSDMTPEDWQHIANNDIQQQQNYDLYDGFVILHGTDTMAFTASALSFMLENLAKPVIITGSQQIPLAEELRSSDGQTNLLNALYLAANHPVNEVSLFFNNNQLFRGNRTTTKAHADDGFDTFASSPNLSVLLEAGIHHIRRQQSSSVVSPTSNGPLIVHRITPQPIGVVTIYPGISGAVVRRNFLLQQPVKALILLRSYGVGNAPQKAELLDELKNASDRGIVVVVNLTQCISGSVNMGNALAQAGVISGFDMTVEAALTKLHYLLSQSLSPNEEIRQQLMQQNLRGELTDT
B: QKKSIYVAYTGGTIGMQRSDNGYIPVSGHLQQRQQLALMPEFHRPEMPDFTIHEYAPLIDSSSDMTPEDWQHIANNDIQQQNYDLYDGFVILHGTDTMAFTASALSFMLENLAKPVIITGSQIPLAEELRSDGQTNLLNALYLAANHPVNEVSSLFFNNNQLFRGNRTTTKAHADGFDTTFASPNLSSVLLEAGIHHIRRQQSSVVSPTSNGPLIVHRITPQPIGVVTIYPGISGAVVRRNFLLQQPVKALILLRSYGVGNAPQKAELLDELKNASDRGIVVVNLTQCISGSVNNMGNALAQAGVISGFDMTVEAALTKLHYLLSQSLSPNEIRQQLMQQNLRGELTDT
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:49)
Show buried residues

Minimal score value
-3.8614
Maximal score value
1.9585
Average score
-0.5856
Total score value
-387.6778

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 Q A -3.3674
3 K A -3.0474
4 K A -2.2785
5 S A -1.1156
6 I A 0.0000
7 Y A 0.0000
8 V A 0.0000
9 A A 0.0000
10 Y A 0.0000
11 T A 0.0000
12 G A 0.0000
13 G A -0.5471
14 T A -0.3289
15 I A 0.0000
16 G A 0.0000
17 M A -0.3359
18 Q A -1.2132
19 R A -2.5147
20 S A -2.2133
21 D A -2.7736
22 N A -2.4178
23 G A -1.6762
24 Y A -0.8871
25 I A -0.1527
26 P A -0.1781
27 V A 0.1307
28 S A -0.4887
29 G A -1.1144
30 H A -1.2784
31 L A 0.0000
32 Q A -1.9146
33 R A -2.1436
34 Q A -0.8947
35 L A 0.0000
36 A A -0.3667
37 L A 0.7643
38 M A -0.1447
39 P A -0.9488
40 E A -1.7767
41 F A 0.0000
42 H A -2.6677
43 R A -3.6048
44 P A -3.0317
45 E A -3.3812
46 M A 0.0000
47 P A 0.0000
48 D A -2.1714
49 F A -0.4520
50 T A -0.2142
51 I A -0.2912
52 H A -0.7903
53 E A -0.7874
54 Y A 0.0000
55 A A -0.1513
56 P A -0.3304
57 L A -0.2087
58 I A -0.9653
59 D A -2.5300
60 S A 0.0000
61 S A -2.1159
62 D A -2.6190
63 M A -1.5854
64 T A -0.7786
65 P A -0.5842
66 E A -1.6561
67 D A -1.3439
68 W A 0.0000
69 Q A 0.0000
70 H A -1.3092
71 I A 0.0000
72 A A 0.0000
73 N A -1.0073
74 D A -1.0254
75 I A 0.0000
76 Q A -1.0380
77 Q A -1.7322
78 N A -0.9671
79 Y A -1.0014
80 D A -1.4294
81 L A 0.3238
82 Y A -0.2616
83 D A -1.2029
84 G A 0.0000
85 F A 0.0000
86 V A 0.0000
87 I A 0.0000
88 L A 0.0000
89 H A 0.0000
90 G A 0.0000
91 T A -1.2331
92 D A -2.3292
93 T A -1.2984
94 M A 0.0000
95 A A 0.0000
96 F A 0.2536
97 T A 0.0000
98 A A 0.0000
99 S A 0.0000
100 A A 0.0000
101 L A 0.0000
102 S A 0.0000
103 F A 0.0000
104 M A 0.0000
105 L A 0.0000
106 E A -0.5473
107 N A -0.8802
108 L A 0.0000
109 A A -0.7512
110 K A -0.9518
111 P A 0.0000
112 V A 0.0000
113 I A 0.0000
114 I A 0.0000
115 T A 0.0000
116 G A 0.0000
117 S A 0.0000
118 Q A 0.0526
119 I A -0.1440
120 P A 0.0000
121 L A 0.0000
122 A A -0.6651
123 E A -0.8778
124 L A 0.2344
125 R A -1.3594
126 S A 0.0000
127 D A -1.0455
128 G A 0.0000
129 Q A -0.5101
130 T A -0.8099
131 N A 0.0000
132 L A 0.0000
133 L A 0.0759
134 N A -0.2603
135 A A 0.0000
136 L A 0.0000
137 Y A -0.2287
138 L A 0.0000
139 A A 0.0000
140 A A 0.0000
141 N A -1.2279
142 H A -1.1024
143 P A -0.9426
144 V A 0.0000
145 N A -0.9155
146 E A 0.0000
147 V A 0.0000
148 S A 0.0000
149 L A 0.0000
150 F A 0.0000
151 F A 0.0000
152 N A -2.1360
153 N A -2.1537
154 Q A -1.8303
155 L A 0.0000
156 F A 0.0000
157 R A 0.0000
158 G A 0.0000
159 N A 0.0000
160 R A 0.0000
161 T A 0.0000
162 T A -0.1194
163 K A -0.8334
164 A A -0.1979
165 H A -0.7242
166 A A -1.0076
167 D A -1.5524
168 G A -0.5700
169 F A 0.8456
170 D A -0.3730
171 T A -0.4335
172 F A 0.0000
173 A A -0.3178
174 S A 0.1322
175 P A 0.2658
176 N A 0.0102
177 L A 0.1310
178 S A -0.0322
179 V A -0.2491
180 L A 0.0000
181 L A 0.0000
182 E A -2.0812
183 A A 0.0000
184 G A -0.7535
185 I A 0.9764
186 H A -0.5833
187 I A -1.1896
188 R A -2.5193
189 R A -2.1251
190 Q A -1.2041
191 S A -0.5762
192 S A -0.0579
193 V A 0.0000
194 V A 1.5508
195 S A 0.5073
196 P A -0.2558
197 T A -0.5260
198 S A -1.1728
199 N A -1.6793
200 G A -1.1492
201 P A -0.4853
202 L A -0.2001
203 I A 0.2098
204 V A 0.0100
205 H A -0.2370
206 R A -0.4782
207 I A 0.0000
208 T A -0.4686
209 P A -0.4034
210 Q A -0.3203
211 P A -0.3565
212 I A 0.2832
213 G A 0.6519
214 V A 1.0658
215 V A 0.6920
216 T A 0.2739
217 I A 0.0000
218 Y A 0.6646
219 P A -0.0598
220 G A -0.4417
221 I A 0.0000
222 S A -0.5041
223 G A 0.0000
224 A A -0.5890
225 V A 0.0730
226 V A 0.0000
227 R A -1.8357
228 N A -1.2342
229 F A -0.0701
230 L A 0.0000
231 L A -0.4826
232 Q A -1.1648
233 P A -0.8359
234 V A -0.5571
235 K A -1.1777
236 A A 0.0000
237 L A 0.0000
238 I A 0.0000
239 L A 0.0000
240 R A -0.2420
241 S A 0.0000
242 Y A 0.2602
243 G A 0.3994
244 V A 1.0497
245 G A 0.0000
246 N A -1.0998
247 A A -0.7234
248 P A -1.1607
249 Q A -1.8601
250 K A -1.8920
251 A A -1.8614
252 E A -2.8193
253 L A 0.0000
254 L A -2.4372
255 D A -3.5007
256 E A -3.0374
257 L A 0.0000
258 K A -3.7928
259 N A -3.8614
260 A A 0.0000
261 S A -2.9846
262 D A -3.6841
263 R A -3.4277
264 G A -2.2108
265 I A 0.0000
266 V A 0.0000
267 V A 0.0000
268 V A 0.0000
269 N A 0.0000
270 L A 0.0000
271 T A 0.2978
272 Q A 0.4389
273 C A 1.3462
274 I A 1.9439
275 S A 0.7227
276 G A 0.2177
277 S A -0.0535
278 V A 0.0000
279 N A -0.8351
280 M A -0.0865
286 G A -0.8391
287 N A -1.1828
288 A A -1.2901
289 L A 0.0000
290 A A -0.8690
291 Q A -1.6453
292 A A 0.0000
293 G A -1.3877
294 V A 0.0000
295 I A -0.1226
296 S A -0.0807
297 G A 0.0000
298 F A -0.4766
299 D A 0.0000
300 M A 0.0000
301 T A 0.3872
302 V A 0.5047
303 E A 0.2211
304 A A 0.0000
305 A A 0.0000
306 L A 0.4941
307 T A 0.0000
308 K A 0.0000
309 L A 0.0000
310 H A 0.0000
311 Y A 0.0000
312 L A 0.0000
313 L A -0.0906
314 S A -0.2293
315 Q A -0.3637
316 S A -0.4454
317 L A -0.3631
318 S A -0.9182
319 P A -1.8303
320 N A -2.2692
321 E A -2.2436
322 I A 0.0000
323 R A -1.6580
324 Q A -2.0874
325 L A -1.2108
326 M A 0.0000
327 Q A -1.3041
328 Q A -1.6963
329 N A -1.7846
330 L A -0.6023
331 R A -0.5981
332 G A 0.0000
333 E A 0.0000
334 L A 0.0000
335 T A -1.2843
336 D A -2.3160
337 T A -1.0712
2 Q B -2.8133
3 K B -2.9822
4 K B -2.3788
5 S B -1.2672
6 I B 0.0000
7 Y B 0.0000
8 V B 0.0000
9 A B 0.0000
10 Y B 0.0000
11 T B 0.0000
12 G B 0.0000
13 G B -0.4625
14 T B -0.3052
15 I B 0.0000
16 G B 0.0000
17 M B -0.4482
18 Q B -1.1900
19 R B -2.5479
20 S B -2.4663
21 D B -3.0891
22 N B -2.8048
23 G B -1.8794
24 Y B -1.1863
25 I B 0.0000
26 P B -0.5003
27 V B 0.0000
28 S B -0.4761
29 G B -0.9078
30 H B 0.0000
31 L B 0.0000
32 Q B -1.3691
33 R B -1.4253
34 Q B -0.5344
35 L B 0.0000
36 A B -0.0439
37 L B 0.9694
38 M B 0.1672
39 P B -0.4471
40 E B -1.0952
41 F B 0.0000
42 H B -1.7139
43 R B -2.1786
44 P B -2.2912
45 E B -2.9576
46 M B 0.0000
47 P B 0.0000
48 D B -2.2578
49 F B -0.6837
50 T B -0.2990
51 I B -0.2669
52 H B -0.7915
53 E B -0.7409
54 Y B 0.0000
55 A B -0.1256
56 P B -0.1523
57 L B -0.0161
58 I B -0.6295
59 D B -1.9636
60 S B 0.0000
61 S B -1.8905
62 D B -2.3839
63 M B -1.5744
64 T B -1.1864
65 P B -1.3990
66 E B -2.5052
67 D B -1.8267
68 W B 0.0000
69 Q B -1.9778
70 H B -1.9947
71 I B 0.0000
72 A B 0.0000
73 N B -2.0145
74 D B -1.5774
75 I B 0.0000
76 Q B -1.7642
77 Q B -2.0017
78 N B -1.2027
79 Y B -1.2274
80 D B -1.5100
81 L B 0.2648
82 Y B -0.3407
83 D B -1.2411
84 G B 0.0000
85 F B 0.0000
86 V B 0.0000
87 I B 0.0000
88 L B 0.0000
89 H B 0.0000
90 G B -0.8662
91 T B -1.1720
92 D B -2.2385
93 T B -1.2089
94 M B 0.0000
95 A B 0.0000
96 F B 0.2557
97 T B 0.0000
98 A B 0.0000
99 S B 0.0000
100 A B 0.0000
101 L B 0.0000
102 S B 0.0000
103 F B 0.0000
104 M B 0.0000
105 L B 0.0000
106 E B -0.1974
107 N B 0.0000
108 L B 0.0000
109 A B -0.5886
110 K B -0.9432
111 P B 0.0000
112 V B 0.0000
113 I B 0.0000
114 I B 0.0000
115 T B 0.0000
116 G B 0.0000
117 S B 0.0000
118 Q B 0.0247
119 I B -0.0730
120 P B 0.0000
121 L B 0.0000
122 A B -0.5159
123 E B -0.6688
124 L B 0.3152
125 R B -1.3349
126 S B 0.0000
127 D B -1.0466
128 G B 0.0000
129 Q B -0.5224
130 T B -0.8419
131 N B 0.0000
132 L B 0.0000
133 L B 0.0008
134 N B -0.3175
135 A B 0.0000
136 L B 0.0000
137 Y B -0.2983
138 L B 0.0000
139 A B 0.0000
140 A B 0.0000
141 N B -1.2047
142 H B -1.0848
143 P B -0.9420
144 V B 0.0000
145 N B -0.9396
146 E B 0.0000
147 V B 0.0000
148 S B 0.0000
149 L B 0.0000
150 F B 0.0000
151 F B 0.0000
152 N B -1.9375
153 N B -2.1555
154 Q B -1.9631
155 L B 0.0000
156 F B 0.0000
157 R B 0.0000
158 G B 0.0000
159 N B 0.0000
160 R B 0.0000
161 T B 0.0000
162 T B -0.0998
163 K B -0.7705
164 A B -0.3206
165 H B -0.6953
166 A B -1.0120
167 D B -1.5835
168 G B -0.6321
169 F B 0.7065
170 D B -0.4060
171 T B -0.3864
172 F B 0.0000
173 A B -0.2727
174 S B 0.1269
175 P B 0.2430
176 N B -0.0113
177 L B 0.1227
178 S B -0.0674
179 V B -0.4098
180 L B 0.0000
181 L B 0.0000
182 E B -2.5714
183 A B 0.0000
184 G B -0.8360
185 I B 0.9247
186 H B -0.6705
187 I B -1.3773
188 R B -2.7294
189 R B -2.3026
190 Q B -1.4462
191 S B -0.5835
192 S B -0.0951
193 V B 0.0000
194 V B 1.5247
195 S B 0.5258
196 P B -0.1693
197 T B -0.4496
198 S B -1.1027
199 N B -1.6345
200 G B -1.0151
201 P B -0.3640
202 L B 0.1372
203 I B 0.6265
204 V B -0.1452
205 H B -0.9243
206 R B -2.1651
207 I B 0.0000
208 T B -1.0834
209 P B -0.5902
210 Q B -0.3262
211 P B -0.4543
212 I B 0.2718
213 G B 0.6152
214 V B 1.0713
215 V B 0.7122
216 T B 0.3068
217 I B 0.0000
218 Y B 0.7570
219 P B -0.0184
220 G B -0.4053
221 I B 0.0000
222 S B -0.5265
223 G B 0.0000
224 A B -0.6305
225 V B 0.0332
226 V B 0.0000
227 R B -2.0199
228 N B -1.1095
229 F B -0.0595
230 L B 0.0000
231 L B -0.5132
232 Q B -1.1541
233 P B -0.8586
234 V B -0.5614
235 K B -1.2329
236 A B 0.0000
237 L B 0.0000
238 I B 0.0000
239 L B 0.0000
240 R B -0.2124
241 S B 0.0000
242 Y B 0.2949
243 G B 0.4278
244 V B 1.0639
245 G B 0.0000
246 N B -1.0849
247 A B -0.6359
248 P B -1.0949
249 Q B -1.7648
250 K B -1.7343
251 A B -1.8000
252 E B -2.8425
253 L B 0.0000
254 L B -2.3687
255 D B -3.4831
256 E B -3.0698
257 L B 0.0000
258 K B -3.5976
259 N B -3.8058
260 A B 0.0000
261 S B -2.9413
262 D B -3.6078
263 R B -3.4282
264 G B -2.2458
265 I B 0.0000
266 V B 0.0000
267 V B 0.0000
268 V B 0.0000
269 N B 0.0000
270 L B 0.0000
271 T B 0.3285
272 Q B 0.4758
273 C B 1.4005
274 I B 1.9585
275 S B 0.7116
276 G B 0.2118
277 S B -0.0258
278 V B 0.0000
279 N B -0.8196
280 M B -0.0508
286 G B -0.8150
287 N B -1.0622
288 A B -1.2035
289 L B 0.0000
290 A B -0.7966
291 Q B -1.5914
292 A B 0.0000
293 G B -1.3193
294 V B 0.0000
295 I B -0.1063
296 S B 0.0000
297 G B 0.0000
298 F B -0.4820
299 D B 0.0000
300 M B 0.0000
301 T B 0.3727
302 V B 0.4879
303 E B 0.2109
304 A B 0.0000
305 A B 0.0000
306 L B 0.4861
307 T B 0.0000
308 K B 0.0000
309 L B 0.0000
310 H B 0.0000
311 Y B 0.0000
312 L B 0.0000
313 L B -0.1004
314 S B -0.5718
315 Q B -0.6124
316 S B -0.2977
317 L B -0.3714
318 S B -0.9033
319 P B -1.8132
320 N B -2.2102
321 E B -2.1481
322 I B 0.0000
323 R B -1.6291
324 Q B -2.0513
325 L B -1.2747
326 M B 0.0000
327 Q B -1.4659
328 Q B -1.9686
329 N B -1.8866
330 L B -0.5959
331 R B 0.0000
332 G B 0.0000
333 E B 0.0000
334 L B 0.0000
335 T B -1.3540
336 D B -2.3618
337 T B -0.9352
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Laboratory of Theory of Biopolymers 2018