Project name: 35r0

Status: done

Started: 2025-02-26 00:59:15
Settings
Chain sequence(s) A: FSRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNSPAVYLLDGLRAQDDYNGWDINTPAFEWYYQSGLSIVMPVGGQSSFYSDWYSPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGSAAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGMGPSLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGANIPAEFLENFVRSSNLKFQDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAGFAVTNDGVI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:47)
Show buried residues

Minimal score value
-3.0245
Maximal score value
2.6805
Average score
-0.4411
Total score value
-129.6942

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.0443
2 S A -0.3714
3 R A -1.7732
4 P A -1.1415
5 G A -1.0373
6 L A -0.6487
7 P A -0.4879
8 V A -0.1595
9 E A -0.0540
10 Y A 0.6437
11 L A 0.0000
12 Q A -1.7992
13 V A 0.0000
14 P A -1.6023
15 S A 0.0000
16 P A -0.9936
17 S A -0.7029
18 M A 0.0000
19 G A -1.3492
20 R A -1.9986
21 D A -2.7245
22 I A 0.0000
23 K A -1.5038
24 V A 0.0000
25 Q A 0.0000
26 F A 0.0000
27 Q A 0.0000
28 S A -0.9140
29 G A -1.0563
30 G A -1.6719
31 N A -2.3167
32 N A -2.4085
33 S A 0.0000
34 P A 0.0000
35 A A 0.0000
36 V A 0.0000
37 Y A 0.0000
38 L A 0.0000
39 L A 0.0000
40 D A 0.0000
41 G A 0.0000
42 L A -1.1087
43 R A -2.5371
44 A A 0.0000
45 Q A -2.5649
46 D A -3.0245
47 D A -2.0995
48 Y A -0.4926
49 N A 0.0000
50 G A 0.0000
51 W A 0.0000
52 D A 0.0000
53 I A 0.8043
54 N A -0.3214
55 T A 0.0000
56 P A -0.2840
57 A A 0.0000
58 F A 0.0000
59 E A -0.6428
60 W A -0.2590
61 Y A 0.0000
62 Y A -0.0759
63 Q A -1.1043
64 S A 0.0000
65 G A -0.7910
66 L A 0.0000
67 S A 0.0000
68 I A 0.0000
69 V A 0.0000
70 M A 0.0000
71 P A 0.0000
72 V A 0.0000
73 G A 0.0000
74 G A 0.0000
75 Q A -1.4740
76 S A 0.0000
77 S A 0.0000
78 F A 0.0000
79 Y A 0.0000
80 S A 0.0000
81 D A -0.6066
82 W A 0.0000
83 Y A 0.8881
84 S A 0.0498
85 P A -0.1192
86 A A 0.0000
87 C A -0.5479
88 G A -1.4611
89 K A -1.9595
90 A A -0.8619
91 G A -0.6004
92 C A 0.0894
93 Q A -0.4316
94 T A -0.3988
95 Y A 0.0000
96 K A -0.8383
97 W A 0.0000
98 E A -0.5897
99 T A -0.5163
100 F A 0.0000
101 L A 0.0000
102 T A -0.3519
103 S A -0.5249
104 E A -0.6937
105 L A 0.0000
106 P A 0.0000
107 Q A -1.5245
108 W A -0.8581
109 L A 0.0000
110 S A -1.4636
111 A A -0.9375
112 N A -1.3325
113 R A -1.7433
114 A A -1.7832
115 V A 0.0000
116 K A -1.8135
117 P A -1.1645
118 T A -0.7836
119 G A -0.3979
120 S A 0.0000
121 A A 0.0000
122 A A 0.0000
123 I A 0.0000
124 G A 0.0000
125 L A 0.0000
126 S A -0.1166
127 M A 0.0000
128 A A 0.0000
129 G A 0.0000
130 S A 0.0000
131 S A 0.0000
132 A A 0.0000
133 M A 0.0000
134 I A 0.0000
135 L A 0.0000
136 A A 0.0000
137 A A 0.0000
138 Y A -0.2243
139 H A -0.4186
140 P A -0.8223
141 Q A -1.1855
142 Q A 0.0000
143 F A 0.0000
144 I A -0.0059
145 Y A 0.0000
146 A A 0.0000
147 G A 0.0000
148 S A 0.0000
149 L A 0.0000
150 S A 0.0000
151 A A 0.0000
152 L A 0.0131
153 L A 0.0000
154 D A -1.2658
155 P A 0.0000
156 S A -1.5785
157 Q A -1.6680
158 G A -0.5953
159 M A 0.4637
160 G A 0.0000
161 P A -0.0567
162 S A 0.3573
163 L A 0.8740
164 I A 0.0000
165 G A -0.0724
166 L A 0.7225
167 A A -0.3112
168 M A 0.0000
169 G A -1.3020
170 D A -2.1248
171 A A 0.0000
172 G A -1.8300
173 G A -1.6615
174 Y A 0.0000
175 K A -1.9034
176 A A 0.0000
177 A A -0.7648
178 D A -0.6796
179 M A 0.0000
180 W A 0.0000
181 G A 0.0000
182 P A -0.6575
183 S A -1.0287
184 S A -0.9086
185 D A -1.1679
186 P A -1.2812
187 A A 0.0000
188 W A 0.0000
189 E A -2.7031
190 R A -1.6984
191 N A 0.0000
192 D A 0.0000
193 P A 0.0000
194 T A -1.4078
195 Q A -2.0874
196 Q A 0.0000
197 I A 0.0000
198 P A -1.0343
199 K A -1.2777
200 L A 0.0000
201 V A -1.1799
202 A A -0.8557
203 N A -1.3128
204 N A -1.5576
205 T A 0.0000
206 R A -0.6602
207 L A 0.0000
208 W A 0.0000
209 V A 0.0000
210 Y A 0.0000
211 C A 0.0000
212 G A 0.0000
213 N A -0.7650
214 G A -0.3684
215 T A -0.7286
216 P A -1.0451
217 N A -1.3670
218 E A -1.9050
219 L A -0.6510
220 G A -0.8572
221 G A -0.5989
222 A A -0.3672
223 N A 0.1964
224 I A 1.9366
225 P A 1.0586
226 A A 0.0000
227 E A 0.5740
228 F A 1.8928
229 L A 1.0926
230 E A 0.0000
231 N A -0.6787
232 F A 0.2822
233 V A 0.0000
234 R A -0.6304
235 S A -0.6527
236 S A 0.0000
237 N A 0.0000
238 L A -0.6017
239 K A -2.1418
240 F A 0.0000
241 Q A -1.6783
242 D A -2.7064
243 A A -1.8926
244 Y A 0.0000
245 N A -2.4645
246 A A -1.2370
247 A A -1.0044
248 G A -1.1486
249 G A -1.7306
250 H A -1.6678
251 N A -1.2113
252 A A -0.5682
253 V A 0.2267
254 F A 0.4898
255 N A 0.0751
256 F A 0.1561
257 P A -0.3161
258 P A -0.6328
259 N A -0.9519
260 G A 0.0000
261 T A 0.0000
262 H A -0.3217
263 S A -0.4971
264 W A -0.4288
265 E A -1.1171
266 Y A 0.0000
267 W A 0.0000
268 G A 0.0000
269 A A -0.4027
270 Q A -0.5549
271 L A 0.0000
272 N A -0.8886
273 A A -0.6093
274 M A 0.0000
275 K A -1.0272
276 G A -1.1120
277 D A -0.8394
278 L A 0.0000
279 Q A -0.7667
280 S A -0.6340
281 S A -0.4718
282 L A -0.2989
283 G A -0.3724
284 A A 0.0000
285 G A 0.3003
286 F A 2.1336
287 A A 1.5380
288 V A 1.6611
289 T A -0.2436
290 N A -1.5823
291 D A -1.7591
292 G A -0.3665
293 V A 2.1292
294 I A 2.6805
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Laboratory of Theory of Biopolymers 2018