Project name: query_structure

Status: done

Started: 2026-03-16 21:22:12
Settings
Chain sequence(s) A: MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFARSTRGLIR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:25)
Show buried residues

Minimal score value
-3.7229
Maximal score value
2.041
Average score
-0.6617
Total score value
-173.3662

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9242
2 I A 1.0604
3 D A -0.5606
4 K A -1.4730
5 S A -1.1865
6 A A -0.5810
7 F A 0.7373
8 V A 1.0151
9 H A 0.7031
10 P A 0.4669
11 T A 0.9206
12 A A 1.5879
13 I A 1.9629
14 V A 0.5168
15 E A -1.5919
16 E A -2.1465
17 G A -1.5174
18 A A 0.0000
19 S A -0.4336
20 I A 0.0000
21 G A -0.9776
22 A A -1.3710
23 N A -1.9520
24 A A 0.0000
25 H A -0.5926
26 I A 0.0000
27 G A 0.0000
28 P A 0.7718
29 F A 2.0410
30 C A 0.0000
31 I A 1.8008
32 V A 0.0000
33 G A 0.0000
34 P A -1.8045
35 H A -2.1842
36 V A 0.0000
37 E A -1.6838
38 I A 0.0000
39 G A -2.0905
40 E A -2.5199
41 G A -2.2357
42 T A 0.0000
43 V A -0.9325
44 L A 0.0000
45 K A -0.7234
46 S A 0.2386
47 H A 0.7402
48 V A 0.0000
49 V A 1.2018
50 V A 0.0000
51 N A -0.9229
52 G A -1.4002
53 H A -2.0417
54 T A 0.0000
55 K A -2.2557
56 I A 0.0000
57 G A -2.2263
58 R A -3.2162
59 D A -3.4756
60 N A 0.0000
61 E A -1.6689
62 I A 0.0000
63 Y A -0.3705
64 Q A 0.2148
65 F A 1.3307
66 A A 0.0000
67 S A 0.3981
68 I A 0.0000
69 G A 0.0000
70 E A -0.6773
71 V A -0.3194
72 N A 0.0000
73 Q A -1.0843
74 D A -0.4636
75 L A 0.4115
76 K A -0.9899
77 Y A -0.4798
78 A A -0.1791
79 G A -0.7154
80 E A -0.5389
81 P A -0.7669
82 T A 0.0000
83 R A -2.2303
84 V A 0.0000
85 E A -1.7915
86 I A 0.0000
87 G A -1.6540
88 D A -2.5175
89 R A -3.0342
90 N A 0.0000
91 R A -1.3919
92 I A 0.0000
93 R A -0.6706
94 E A -0.4405
95 S A 0.0171
96 V A 0.0000
97 T A -0.1195
98 I A 0.0000
99 H A -0.7349
100 R A -1.0119
101 G A 0.0000
102 T A 0.0000
103 V A 0.2519
104 Q A -0.8557
105 G A -0.5683
106 G A -0.5584
107 G A -0.3806
108 L A -0.7625
109 T A 0.0000
110 K A -1.2853
111 V A 0.0000
112 G A -1.4145
113 S A -1.7702
114 D A -1.9524
115 N A 0.0000
116 L A -0.2373
117 L A 0.0000
118 M A -0.2852
119 I A -0.1614
120 N A -0.9121
121 A A 0.0000
122 H A -0.5364
123 I A 0.0000
124 A A 0.0000
125 H A -0.7025
126 D A 0.0000
127 C A 0.0000
128 T A -0.4908
129 V A 0.0000
130 G A -1.3015
131 N A -2.0192
132 R A -2.2475
133 C A 0.0000
134 I A 0.1503
135 L A 0.0000
136 A A -0.2338
137 N A -1.0860
138 N A -1.0114
139 A A 0.0000
140 T A -0.4309
141 L A 0.0000
142 A A -0.2062
143 G A 0.0000
144 H A 0.1001
145 V A 0.0000
146 S A -0.0268
147 V A 0.0000
148 D A -1.1790
149 D A -1.2568
150 F A -0.5066
151 A A 0.0000
152 I A 0.3781
153 I A 0.0000
154 G A 0.0250
155 G A -0.0384
156 M A 0.4959
157 T A 0.0000
158 A A -0.2203
159 V A 0.0000
160 H A -0.4811
161 Q A -0.2918
162 F A 1.0714
163 C A 0.0000
164 I A -0.2111
165 I A 0.0000
166 G A 0.0000
167 A A -0.4436
168 H A 0.0000
169 V A 0.0000
170 M A 0.8327
171 V A 0.0000
172 G A 0.0452
173 G A 0.0042
174 C A 0.4096
175 S A 0.0000
176 G A 0.0000
177 V A 0.0000
178 A A -0.7592
179 Q A -1.0738
180 D A 0.0000
181 V A 0.0000
182 P A 0.0000
183 P A 0.0000
184 Y A 0.0000
185 V A 0.0000
186 I A 1.1582
187 A A 0.0000
188 Q A -0.4845
189 G A -1.0571
190 N A -1.8298
191 H A -2.0236
192 A A 0.0000
193 T A -0.8040
194 P A 0.4008
195 F A 1.7614
196 G A 0.7614
197 V A -0.0565
198 N A 0.0000
199 I A -1.5492
200 E A -2.8616
201 G A 0.0000
202 L A 0.0000
203 K A -3.7229
204 R A -3.4966
205 R A -2.3610
206 G A -1.8744
207 F A -1.6642
208 S A -1.9931
209 R A -3.0245
210 E A -2.8826
211 A A 0.0000
212 I A 0.0000
213 T A -1.8747
214 A A 0.0000
215 I A 0.0000
216 R A -2.4512
217 N A -1.9011
218 A A 0.0000
219 Y A -1.5017
220 K A -2.4352
221 L A -2.1326
222 I A 0.0000
223 Y A 0.0000
224 R A -2.7392
225 S A -2.1208
226 G A -2.0764
227 K A -2.7324
228 T A -1.9124
229 L A -1.8814
230 D A -2.9631
231 E A -3.0870
232 V A 0.0000
233 K A -2.5930
234 P A -2.3424
235 E A -2.7247
236 I A 0.0000
237 A A -2.4493
238 E A -3.0472
239 L A -1.8706
240 A A 0.0000
241 E A -2.5778
242 T A -1.2586
243 Y A -1.0694
244 P A -1.1119
245 E A -1.1975
246 V A 0.0000
247 K A -2.5183
248 A A -1.4501
249 F A 0.0000
250 T A -1.8055
251 D A -2.5574
252 F A 0.0000
253 F A 0.0000
254 A A -1.5250
255 R A -2.3368
256 S A -1.2473
257 T A -0.6584
258 R A -0.9350
259 G A -1.0684
260 L A -0.7556
261 I A 0.0000
262 R A -1.8328
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Laboratory of Theory of Biopolymers 2018