Project name: query_structure

Status: done

Started: 2026-03-16 23:12:08
Settings
Chain sequence(s) A: SWPVCTRNGLPVCGETCVGGTCNTPGCTC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:06)
Show buried residues

Minimal score value
-1.8535
Maximal score value
1.757
Average score
-0.0903
Total score value
-2.6178

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A 0.6007
2 W A 1.6313
3 P A 1.2572
4 V A 1.0453
5 C A 0.0000
6 T A 0.0000
7 R A -1.7526
8 N A -1.8535
9 G A -0.7351
10 L A 0.6611
11 P A 0.2936
12 V A 0.8518
13 C A -0.0185
14 G A -0.4357
15 E A -0.8821
16 T A -0.0480
17 C A 0.0000
18 V A 1.7570
19 G A 0.4635
20 G A 0.5067
21 T A 0.0658
22 C A -0.4509
23 N A -1.4805
24 T A -1.0067
25 P A -0.7451
26 G A -1.1649
27 C A -0.9278
28 T A -0.4905
29 C A 0.2401
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Laboratory of Theory of Biopolymers 2018