| Chain sequence(s) |
A: SWPVCTRNGLPVCGETCVGGTCNTPGCTC
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:05)
[INFO] Main: Simulation completed successfully. (00:00:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | 0.6007 | |
| 2 | W | A | 1.6313 | |
| 3 | P | A | 1.2572 | |
| 4 | V | A | 1.0453 | |
| 5 | C | A | 0.0000 | |
| 6 | T | A | 0.0000 | |
| 7 | R | A | -1.7526 | |
| 8 | N | A | -1.8535 | |
| 9 | G | A | -0.7351 | |
| 10 | L | A | 0.6611 | |
| 11 | P | A | 0.2936 | |
| 12 | V | A | 0.8518 | |
| 13 | C | A | -0.0185 | |
| 14 | G | A | -0.4357 | |
| 15 | E | A | -0.8821 | |
| 16 | T | A | -0.0480 | |
| 17 | C | A | 0.0000 | |
| 18 | V | A | 1.7570 | |
| 19 | G | A | 0.4635 | |
| 20 | G | A | 0.5067 | |
| 21 | T | A | 0.0658 | |
| 22 | C | A | -0.4509 | |
| 23 | N | A | -1.4805 | |
| 24 | T | A | -1.0067 | |
| 25 | P | A | -0.7451 | |
| 26 | G | A | -1.1649 | |
| 27 | C | A | -0.9278 | |
| 28 | T | A | -0.4905 | |
| 29 | C | A | 0.2401 |