| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVEHTGMHWYRQAPGKEREWVAAIYSSGFKTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGDWLYTYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:33)
[INFO] Main: Simulation completed successfully. (00:01:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2911 | |
| 2 | V | A | -0.3850 | |
| 3 | Q | A | -0.5542 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2813 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5715 | |
| 8 | G | A | -1.0693 | |
| 9 | G | A | -0.8475 | |
| 10 | G | A | -0.0735 | |
| 11 | L | A | 1.0137 | |
| 12 | V | A | -0.0044 | |
| 13 | Q | A | -1.2374 | |
| 14 | A | A | -1.4056 | |
| 15 | G | A | -1.3160 | |
| 16 | G | A | -0.8638 | |
| 17 | S | A | -1.2524 | |
| 18 | L | A | -0.9973 | |
| 19 | R | A | -2.3106 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4609 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0210 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.4824 | |
| 26 | G | A | -0.8212 | |
| 27 | F | A | -0.6016 | |
| 28 | P | A | -1.3346 | |
| 29 | V | A | 0.0000 | |
| 30 | E | A | -2.3388 | |
| 31 | H | A | -1.8326 | |
| 32 | T | A | 0.0000 | |
| 33 | G | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4533 | |
| 38 | R | A | -1.3144 | |
| 39 | Q | A | -2.1864 | |
| 40 | A | A | -2.0943 | |
| 41 | P | A | -1.4790 | |
| 42 | G | A | -1.9954 | |
| 43 | K | A | -3.4267 | |
| 44 | E | A | -3.7026 | |
| 45 | R | A | -3.0752 | |
| 46 | E | A | -1.8649 | |
| 47 | W | A | -0.5189 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | Y | A | -0.0922 | |
| 53 | S | A | -0.6754 | |
| 54 | S | A | -0.5661 | |
| 55 | G | A | -0.2976 | |
| 56 | F | A | 1.0910 | |
| 57 | K | A | -0.4634 | |
| 58 | T | A | 0.0904 | |
| 59 | Y | A | 0.1132 | |
| 60 | Y | A | -0.4850 | |
| 61 | A | A | -1.1530 | |
| 62 | D | A | -2.3482 | |
| 63 | S | A | -1.7543 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5299 | |
| 66 | G | A | -1.7680 | |
| 67 | R | A | -1.5137 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9073 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.3867 | |
| 72 | R | A | -1.2540 | |
| 73 | D | A | -1.9043 | |
| 74 | N | A | -2.3585 | |
| 75 | A | A | -1.6521 | |
| 76 | K | A | -2.2937 | |
| 77 | N | A | -1.9185 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6343 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3847 | |
| 85 | S | A | -1.1580 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2914 | |
| 88 | P | A | -1.9088 | |
| 89 | E | A | -2.3433 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9771 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7348 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2159 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.0053 | |
| 100 | D | A | -0.3923 | |
| 101 | Y | A | 0.6337 | |
| 102 | G | A | -0.3644 | |
| 103 | D | A | -0.9280 | |
| 104 | W | A | 0.6406 | |
| 105 | L | A | 2.0192 | |
| 106 | Y | A | 1.9271 | |
| 107 | T | A | 0.6973 | |
| 108 | Y | A | 0.6407 | |
| 109 | D | A | -1.2388 | |
| 110 | Y | A | -0.4054 | |
| 111 | W | A | 0.0106 | |
| 112 | G | A | 0.0260 | |
| 113 | Q | A | -0.8915 | |
| 114 | G | A | -0.5022 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2247 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3202 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7449 |