Project name: query_structure

Status: done

Started: 2026-03-17 00:38:32
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVEHTGMHWYRQAPGKEREWVAAIYSSGFKTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGDWLYTYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:33)
Show buried residues

Minimal score value
-3.7026
Maximal score value
2.0192
Average score
-0.6749
Total score value
-80.9869

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2911
2 V A -0.3850
3 Q A -0.5542
4 L A 0.0000
5 V A 1.2813
6 E A 0.0000
7 S A -0.5715
8 G A -1.0693
9 G A -0.8475
10 G A -0.0735
11 L A 1.0137
12 V A -0.0044
13 Q A -1.2374
14 A A -1.4056
15 G A -1.3160
16 G A -0.8638
17 S A -1.2524
18 L A -0.9973
19 R A -2.3106
20 L A 0.0000
21 S A -0.4609
22 C A 0.0000
23 A A -0.0210
24 A A 0.0000
25 S A -0.4824
26 G A -0.8212
27 F A -0.6016
28 P A -1.3346
29 V A 0.0000
30 E A -2.3388
31 H A -1.8326
32 T A 0.0000
33 G A 0.0000
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 Y A -0.4533
38 R A -1.3144
39 Q A -2.1864
40 A A -2.0943
41 P A -1.4790
42 G A -1.9954
43 K A -3.4267
44 E A -3.7026
45 R A -3.0752
46 E A -1.8649
47 W A -0.5189
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 Y A -0.0922
53 S A -0.6754
54 S A -0.5661
55 G A -0.2976
56 F A 1.0910
57 K A -0.4634
58 T A 0.0904
59 Y A 0.1132
60 Y A -0.4850
61 A A -1.1530
62 D A -2.3482
63 S A -1.7543
64 V A 0.0000
65 K A -2.5299
66 G A -1.7680
67 R A -1.5137
68 F A 0.0000
69 T A -0.9073
70 I A 0.0000
71 S A -0.3867
72 R A -1.2540
73 D A -1.9043
74 N A -2.3585
75 A A -1.6521
76 K A -2.2937
77 N A -1.9185
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.6343
83 M A 0.0000
84 N A -1.3847
85 S A -1.1580
86 L A 0.0000
87 K A -2.2914
88 P A -1.9088
89 E A -2.3433
90 D A 0.0000
91 T A -0.9771
92 A A 0.0000
93 V A -0.7348
94 Y A 0.0000
95 Y A -0.2159
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.0053
100 D A -0.3923
101 Y A 0.6337
102 G A -0.3644
103 D A -0.9280
104 W A 0.6406
105 L A 2.0192
106 Y A 1.9271
107 T A 0.6973
108 Y A 0.6407
109 D A -1.2388
110 Y A -0.4054
111 W A 0.0106
112 G A 0.0260
113 Q A -0.8915
114 G A -0.5022
115 T A 0.0000
116 Q A -1.2247
117 V A 0.0000
118 T A -0.3202
119 V A 0.0000
120 S A -0.7449
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Laboratory of Theory of Biopolymers 2018