Project name: Linker2

Status: done

Started: 2026-07-22 01:34:29
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Chain sequence(s) A: GCGNLSTCLLGTYTQDAHKLQTYPRTNTGSGTPGGGGSGGGGSLAEAKVLANRELDKYGVSDYYKNLINNAKTVEGVKALIDEILAALP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.376
Maximal score value
2.6376
Average score
-0.9016
Total score value
-80.2407

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.3727
2 C A 0.1746
3 G A -0.4600
4 N A -0.6972
5 L A 0.7808
6 S A 0.4615
7 T A 1.0656
8 C A 1.7424
9 L A 2.6376
10 L A 2.5607
11 G A 1.0565
12 T A 0.5309
13 Y A 0.9271
14 T A -0.6181
15 Q A -2.2192
16 D A -2.7443
17 A A -2.0338
18 H A -2.7595
19 K A -2.6152
20 L A -0.9746
21 Q A -1.8597
22 T A -0.8957
23 Y A -0.4634
24 P A -1.2420
25 R A -2.3572
26 T A -1.6587
27 N A -2.0514
28 T A -1.2879
29 G A -1.0495
30 S A -0.8664
31 G A -0.8245
32 T A -0.6976
33 P A -0.7892
34 G A -1.0511
35 G A -1.2343
36 G A -1.1763
37 G A -1.1664
38 S A -1.0074
39 G A -1.1750
40 G A -1.1348
41 G A -1.0597
42 G A -0.6027
43 S A -0.4069
44 L A -0.5358
45 A A -0.1909
46 E A 0.0208
47 A A 0.0000
48 K A -0.8893
49 V A 0.1712
50 L A 0.3681
51 A A 0.0000
52 N A -1.9509
53 R A -2.4114
54 E A -2.2989
55 L A 0.0000
56 D A -3.3760
57 K A -2.7744
58 Y A -0.6379
59 G A -1.3275
60 V A -0.6698
61 S A -0.8548
62 D A -1.7383
63 Y A 0.2377
64 Y A -0.0241
65 K A -1.7315
66 N A -1.9243
67 L A -0.7404
68 I A 0.0000
69 N A -2.3962
70 N A -2.5334
71 A A -2.0857
72 K A -2.3127
73 T A -1.4794
74 V A -1.0868
75 E A -2.1738
76 G A -1.7386
77 V A 0.0000
78 K A -2.1963
79 A A -1.8908
80 L A -1.2730
81 I A 0.0000
82 D A -2.6951
83 E A -2.4838
84 I A 0.0000
85 L A -0.4655
86 A A -0.7164
87 A A -0.3523
88 L A 0.4869
89 P A 0.0453
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Laboratory of Theory of Biopolymers 2018