Project name: query_structure

Status: done

Started: 2026-03-16 21:42:33
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFNIAYWEAGIGGEAIWLRVPGSERSYDLTGLKPGTEYKVWIHGVKGGASSPPLIARFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:49)
Show buried residues

Minimal score value
-3.0863
Maximal score value
1.783
Average score
-0.7295
Total score value
-65.6582

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0639
2 L A 0.4183
3 P A -0.1799
4 A A -0.5078
5 P A 0.0000
6 K A -2.1353
7 N A -1.3615
8 L A 0.0360
9 V A 0.8906
10 V A 0.0017
11 S A -0.6214
12 R A -2.0124
13 V A -1.0395
14 T A -1.8054
15 E A -3.0863
16 D A -2.8008
17 S A -2.1115
18 A A 0.0000
19 R A -1.1958
20 L A 0.0000
21 S A -0.4093
22 W A 0.0000
23 T A -1.3709
24 A A -1.4466
25 P A -1.4089
26 D A -2.2755
27 A A -1.4448
28 A A -1.1953
29 F A 0.0000
30 D A -2.4788
31 S A 0.0000
32 F A 0.0000
33 N A -0.6439
34 I A 0.0000
35 A A 0.0000
36 Y A 0.2937
37 W A -0.8459
38 E A -1.5415
39 A A -1.0709
40 G A -0.0884
41 I A 1.2246
42 G A -0.2454
43 G A -0.9854
44 E A -1.4944
45 A A -0.3149
46 I A 0.9337
47 W A 1.0815
48 L A 0.0652
49 R A -1.6074
50 V A 0.0000
51 P A -1.5565
52 G A 0.0000
53 S A -1.6267
54 E A -1.5466
55 R A -1.1714
56 S A -0.6385
57 Y A -0.6827
58 D A -1.6208
59 L A 0.0000
60 T A -1.3540
61 G A -1.5211
62 L A 0.0000
63 K A -3.0500
64 P A -2.5872
65 G A -1.8092
66 T A -1.8947
67 E A -2.1065
68 Y A 0.0000
69 K A -1.1260
70 V A 0.0000
71 W A 1.0859
72 I A 0.0000
73 H A -0.2956
74 G A 0.0000
75 V A -1.3447
76 K A -1.8254
77 G A -1.4661
78 G A -1.1805
79 A A -0.6613
80 S A -0.4081
81 S A 0.0000
82 P A 0.2850
83 P A 0.3292
84 L A 0.8146
85 I A 1.7830
86 A A 0.3101
87 R A -1.5856
88 F A 0.0000
89 T A -1.5995
90 T A -1.8907
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018