Project name: 2_76_LepB_Aggrescan3D

Status: done

Started: 2026-05-07 20:09:28
Settings
Chain sequence(s) A: VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPTSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:37)
Show buried residues

Minimal score value
-2.3544
Maximal score value
2.2051
Average score
-0.1976
Total score value
-46.0509

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.4754
2 R A -1.3227
3 S A -0.3222
4 F A 1.1281
5 I A 2.1578
6 Y A 1.0295
7 E A -0.8101
8 P A -0.3323
9 F A 0.0301
10 Q A -0.7493
11 I A 0.0000
12 P A -0.2914
13 S A -0.2615
14 G A -0.1025
15 S A -0.0352
16 M A 0.0000
17 M A 0.1509
18 P A 0.0000
19 T A 0.0000
20 L A 0.0000
21 L A 0.2081
22 I A 0.2620
23 G A 0.0000
24 D A 0.0000
25 F A 0.2210
26 I A 0.0000
27 L A 0.4010
28 V A 0.0000
29 E A -0.3647
30 K A -0.5624
31 F A 0.0000
32 A A 0.0193
33 Y A 0.0000
34 G A 0.0000
35 I A -0.0364
36 K A -1.4345
37 D A -0.6632
38 P A 0.0638
39 I A 2.2051
40 Y A 1.4676
41 Q A -1.2946
42 K A -1.9245
43 T A -0.4111
44 L A 1.0640
45 I A 1.9674
46 E A -0.5848
47 T A -0.2490
48 G A -0.2966
49 H A -1.0092
50 P A 0.0000
51 K A -1.4572
52 R A -0.4420
53 G A 0.0000
54 D A -0.1827
55 I A 0.0000
56 V A 0.0000
57 V A 0.0000
58 F A 0.0000
59 K A -1.0101
60 Y A -0.0418
61 P A -0.3683
62 E A -1.9194
63 D A -0.8444
64 P A -0.6250
65 K A -1.6184
66 L A -0.0237
67 D A -1.7110
68 Y A 0.0334
69 I A 0.2848
70 K A 0.0000
71 R A 0.0000
72 A A 0.0000
73 V A 0.0000
74 G A 0.0000
75 L A 0.2567
76 P A -0.1145
77 G A -0.1488
78 D A 0.0000
79 K A -0.2715
80 V A 0.0000
81 T A -0.0147
82 Y A 0.0000
83 D A -0.9047
84 P A 0.1078
85 V A 1.7469
86 S A 0.1737
87 K A -0.3028
88 E A -0.6073
89 L A 0.0000
90 T A -0.0434
91 I A 0.0000
92 Q A -0.1457
93 P A -0.1881
94 G A -0.4891
95 C A 0.0000
96 S A -0.2005
97 S A -0.3252
98 G A -0.7191
99 Q A -1.2712
100 A A -0.1393
101 C A -0.2046
102 E A -1.9409
103 N A -1.1057
104 A A -0.0671
105 L A 0.1677
106 P A -0.1616
107 V A 0.2555
108 T A 0.0217
109 Y A 0.1613
110 S A -0.2976
111 N A -0.9666
112 V A 1.2077
113 E A -1.5424
114 P A -0.5859
115 T A 0.0000
116 S A -0.2964
117 G A -0.4351
118 F A 0.4145
119 F A 0.3922
120 E A -0.3500
121 V A 0.4318
122 P A -0.3450
123 K A -1.9526
124 N A -1.8311
125 E A -1.6705
126 T A -0.6295
127 K A -2.0461
128 E A -2.3544
129 N A -1.6118
130 G A -0.3096
131 I A 0.2561
132 R A -1.0661
133 L A 0.0000
134 S A -0.1017
135 E A -0.2673
136 R A 0.0000
137 K A -1.4365
138 E A 0.0000
139 T A -0.0238
140 L A 0.0000
141 G A -0.4159
142 D A -1.7407
143 V A 0.0380
144 T A 0.0088
145 H A 0.0000
146 R A -1.1712
147 I A 0.0000
148 L A 0.0000
149 T A 0.0000
150 V A 0.0000
151 P A 0.1087
152 I A 1.9698
153 A A 0.1625
154 Q A -1.2309
155 D A -0.6361
156 Q A -1.1646
157 V A 0.0905
158 G A -0.2077
159 M A 0.9699
160 Y A 0.0000
161 Y A 0.2210
162 Q A -1.1469
163 Q A -0.3939
164 P A -0.3620
165 G A -0.5605
166 Q A -0.5733
167 Q A -1.1222
168 L A 0.4720
169 A A 0.0000
170 T A 0.0000
171 W A 0.0000
172 I A 0.2071
173 V A 0.0000
174 P A -0.0927
175 P A -0.3155
176 G A -0.3129
177 Q A -0.3443
178 Y A 0.0000
179 F A 0.0000
180 M A 0.0000
181 M A 0.0000
182 G A 0.0000
183 D A 0.0000
184 N A 0.0000
185 R A 0.0000
186 D A -0.4404
187 N A -0.6000
188 S A 0.0000
189 A A 0.0585
190 D A 0.0000
191 S A 0.0000
192 R A 0.0000
193 Y A 0.3168
194 W A 0.0000
195 G A 0.0000
196 F A 0.1941
197 V A 0.0000
198 P A -0.2171
199 E A -0.4829
200 A A -0.0530
201 N A -0.1853
202 L A 0.2030
203 V A 0.2923
204 G A 0.0000
205 R A -0.8800
206 A A 0.0000
207 T A -0.0288
208 A A -0.0483
209 I A 0.0000
210 W A 0.8304
211 M A 0.3632
212 S A 0.0000
213 F A 0.5011
214 D A -1.1003
215 K A -0.8329
216 Q A -1.6044
217 E A -2.1228
218 G A -1.1196
219 E A -1.6866
220 W A 0.8431
221 P A 0.0842
222 T A -0.1168
223 G A -0.0182
224 V A 1.6153
225 R A 0.2630
226 L A 1.4537
227 S A 0.0023
228 R A -0.2192
229 I A 0.7695
230 G A -0.1464
231 G A -0.4534
232 I A 0.0225
233 H A -0.9394
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018