| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK B: AEAEAKAKAEAEAKAK E: AEAEAKAKAEAEAKAK D: AEAEAKAKAEAEAKAK G: AEAEAKAKAEAEAKAK F: AEAEAKAKAEAEAKAK H: AEAEAKAKAEAEAKAK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:08:47)
[INFO] Main: Simulation completed successfully. (00:08:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -1.6537 | |
| 2 | E | A | -2.9318 | |
| 3 | A | A | -2.4774 | |
| 4 | E | A | -3.6964 | |
| 5 | A | A | -2.9883 | |
| 6 | K | A | -3.6355 | |
| 7 | A | A | -3.5403 | |
| 8 | K | A | -3.7092 | |
| 9 | A | A | -2.6602 | |
| 10 | E | A | -3.1224 | |
| 11 | A | A | -2.9410 | |
| 12 | E | A | -2.9906 | |
| 13 | A | A | -2.2778 | |
| 14 | K | A | -2.8831 | |
| 15 | A | A | 0.0000 | |
| 16 | K | A | -3.1340 | |
| 1 | A | B | -2.2926 | |
| 2 | E | B | -3.1238 | |
| 3 | A | B | -1.9311 | |
| 4 | E | B | -3.2289 | |
| 5 | A | B | -2.7880 | |
| 6 | K | B | -3.0114 | |
| 7 | A | B | -2.3934 | |
| 8 | K | B | 0.0000 | |
| 9 | A | B | -2.1638 | |
| 10 | E | B | -3.0272 | |
| 11 | A | B | 0.0000 | |
| 12 | E | B | 0.0000 | |
| 13 | A | B | -2.7744 | |
| 14 | K | B | -3.5077 | |
| 15 | A | B | -3.3661 | |
| 16 | K | B | -3.2235 | |
| 1 | A | C | -1.8480 | |
| 2 | E | C | -2.6751 | |
| 3 | A | C | -2.3283 | |
| 4 | E | C | -3.1894 | |
| 5 | A | C | -3.1349 | |
| 6 | K | C | -3.1918 | |
| 7 | A | C | -2.8313 | |
| 8 | K | C | -2.3513 | |
| 9 | A | C | -2.7019 | |
| 10 | E | C | -2.7905 | |
| 11 | A | C | 0.0000 | |
| 12 | E | C | 0.0000 | |
| 13 | A | C | -2.2440 | |
| 14 | K | C | -2.7578 | |
| 15 | A | C | 0.0000 | |
| 16 | K | C | -3.1634 | |
| 1 | A | D | -1.3637 | |
| 2 | E | D | -2.4934 | |
| 3 | A | D | -1.8353 | |
| 4 | E | D | -2.1995 | |
| 5 | A | D | -2.1032 | |
| 6 | K | D | -3.0506 | |
| 7 | A | D | -2.5149 | |
| 8 | K | D | -2.2547 | |
| 9 | A | D | -2.4423 | |
| 10 | E | D | -3.0688 | |
| 11 | A | D | 0.0000 | |
| 12 | E | D | -2.8659 | |
| 13 | A | D | -2.4634 | |
| 14 | K | D | -3.0563 | |
| 15 | A | D | -2.8027 | |
| 16 | K | D | -2.9360 | |
| 1 | A | E | -1.7634 | |
| 2 | E | E | -2.5990 | |
| 3 | A | E | -2.2128 | |
| 4 | E | E | -2.4470 | |
| 5 | A | E | -2.5104 | |
| 6 | K | E | -3.1106 | |
| 7 | A | E | -2.7342 | |
| 8 | K | E | -2.1798 | |
| 9 | A | E | -2.5042 | |
| 10 | E | E | -3.1376 | |
| 11 | A | E | 0.0000 | |
| 12 | E | E | 0.0000 | |
| 13 | A | E | -2.5234 | |
| 14 | K | E | -3.1564 | |
| 15 | A | E | 0.0000 | |
| 16 | K | E | -2.9497 | |
| 1 | A | F | -1.2589 | |
| 2 | E | F | -2.4669 | |
| 3 | A | F | -2.0449 | |
| 4 | E | F | -2.4132 | |
| 5 | A | F | -2.1724 | |
| 6 | K | F | -2.9659 | |
| 7 | A | F | -2.8008 | |
| 8 | K | F | -2.6284 | |
| 9 | A | F | -2.1064 | |
| 10 | E | F | -2.8940 | |
| 11 | A | F | 0.0000 | |
| 12 | E | F | -3.2617 | |
| 13 | A | F | -2.4660 | |
| 14 | K | F | -3.2745 | |
| 15 | A | F | 0.0000 | |
| 16 | K | F | -3.0993 | |
| 1 | A | G | -1.7791 | |
| 2 | E | G | -2.6477 | |
| 3 | A | G | -1.8710 | |
| 4 | E | G | -2.4213 | |
| 5 | A | G | -2.5284 | |
| 6 | K | G | -2.9353 | |
| 7 | A | G | -2.1716 | |
| 8 | K | G | 0.0000 | |
| 9 | A | G | -2.4351 | |
| 10 | E | G | -2.9180 | |
| 11 | A | G | -2.2249 | |
| 12 | E | G | 0.0000 | |
| 13 | A | G | -2.3735 | |
| 14 | K | G | -2.9770 | |
| 15 | A | G | -2.8080 | |
| 16 | K | G | -3.0302 | |
| 1 | A | H | -1.5829 | |
| 2 | E | H | -2.9075 | |
| 3 | A | H | -2.0816 | |
| 4 | E | H | -2.4858 | |
| 5 | A | H | -2.1883 | |
| 6 | K | H | -3.0809 | |
| 7 | A | H | -2.5488 | |
| 8 | K | H | 0.0000 | |
| 9 | A | H | -2.1673 | |
| 10 | E | H | -2.8214 | |
| 11 | A | H | 0.0000 | |
| 12 | E | H | -2.6456 | |
| 13 | A | H | -2.7217 | |
| 14 | K | H | -2.9417 | |
| 15 | A | H | -2.9464 | |
| 16 | K | H | -3.3672 |