Project name: 1d997f20259fcb0

Status: done

Started: 2026-06-27 14:46:17
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Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
E: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
G: AEAEAKAKAEAEAKAK
F: AEAEAKAKAEAEAKAK
H: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:49)
Show buried residues

Minimal score value
-3.7092
Maximal score value
0.0
Average score
-2.308
Total score value
-295.422

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.6537
2 E A -2.9318
3 A A -2.4774
4 E A -3.6964
5 A A -2.9883
6 K A -3.6355
7 A A -3.5403
8 K A -3.7092
9 A A -2.6602
10 E A -3.1224
11 A A -2.9410
12 E A -2.9906
13 A A -2.2778
14 K A -2.8831
15 A A 0.0000
16 K A -3.1340
1 A B -2.2926
2 E B -3.1238
3 A B -1.9311
4 E B -3.2289
5 A B -2.7880
6 K B -3.0114
7 A B -2.3934
8 K B 0.0000
9 A B -2.1638
10 E B -3.0272
11 A B 0.0000
12 E B 0.0000
13 A B -2.7744
14 K B -3.5077
15 A B -3.3661
16 K B -3.2235
1 A C -1.8480
2 E C -2.6751
3 A C -2.3283
4 E C -3.1894
5 A C -3.1349
6 K C -3.1918
7 A C -2.8313
8 K C -2.3513
9 A C -2.7019
10 E C -2.7905
11 A C 0.0000
12 E C 0.0000
13 A C -2.2440
14 K C -2.7578
15 A C 0.0000
16 K C -3.1634
1 A D -1.3637
2 E D -2.4934
3 A D -1.8353
4 E D -2.1995
5 A D -2.1032
6 K D -3.0506
7 A D -2.5149
8 K D -2.2547
9 A D -2.4423
10 E D -3.0688
11 A D 0.0000
12 E D -2.8659
13 A D -2.4634
14 K D -3.0563
15 A D -2.8027
16 K D -2.9360
1 A E -1.7634
2 E E -2.5990
3 A E -2.2128
4 E E -2.4470
5 A E -2.5104
6 K E -3.1106
7 A E -2.7342
8 K E -2.1798
9 A E -2.5042
10 E E -3.1376
11 A E 0.0000
12 E E 0.0000
13 A E -2.5234
14 K E -3.1564
15 A E 0.0000
16 K E -2.9497
1 A F -1.2589
2 E F -2.4669
3 A F -2.0449
4 E F -2.4132
5 A F -2.1724
6 K F -2.9659
7 A F -2.8008
8 K F -2.6284
9 A F -2.1064
10 E F -2.8940
11 A F 0.0000
12 E F -3.2617
13 A F -2.4660
14 K F -3.2745
15 A F 0.0000
16 K F -3.0993
1 A G -1.7791
2 E G -2.6477
3 A G -1.8710
4 E G -2.4213
5 A G -2.5284
6 K G -2.9353
7 A G -2.1716
8 K G 0.0000
9 A G -2.4351
10 E G -2.9180
11 A G -2.2249
12 E G 0.0000
13 A G -2.3735
14 K G -2.9770
15 A G -2.8080
16 K G -3.0302
1 A H -1.5829
2 E H -2.9075
3 A H -2.0816
4 E H -2.4858
5 A H -2.1883
6 K H -3.0809
7 A H -2.5488
8 K H 0.0000
9 A H -2.1673
10 E H -2.8214
11 A H 0.0000
12 E H -2.6456
13 A H -2.7217
14 K H -2.9417
15 A H -2.9464
16 K H -3.3672
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Laboratory of Theory of Biopolymers 2018