| Chain sequence(s) |
H: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:18)
[INFO] Main: Simulation completed successfully. (00:01:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4913 | |
| 2 | V | H | -0.8604 | |
| 3 | Q | H | -1.3221 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | -0.1036 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.2129 | |
| 8 | G | H | 0.1756 | |
| 9 | V | H | 1.6963 | |
| 11 | E | H | 0.8175 | |
| 12 | V | H | 1.2930 | |
| 13 | K | H | -0.6156 | |
| 14 | K | H | -1.7159 | |
| 15 | P | H | -1.3938 | |
| 16 | G | H | -1.1932 | |
| 17 | A | H | -1.2440 | |
| 18 | S | H | -1.3260 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.4588 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.3992 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.8293 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8473 | |
| 27 | G | H | -0.9999 | |
| 28 | Y | H | -0.4562 | |
| 29 | T | H | -0.1761 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.3605 | |
| 36 | N | H | -0.4091 | |
| 37 | Y | H | 0.1785 | |
| 38 | Y | H | 0.1643 | |
| 39 | M | H | 0.0000 | |
| 40 | Y | H | 0.0977 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6002 | |
| 45 | A | H | -0.9482 | |
| 46 | P | H | -0.9747 | |
| 47 | G | H | -1.2466 | |
| 48 | Q | H | -1.7521 | |
| 49 | G | H | -1.1129 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.6341 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.7491 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.9709 | |
| 62 | N | H | -1.6798 | |
| 63 | G | H | -1.2341 | |
| 64 | G | H | -1.2065 | |
| 65 | T | H | -0.9704 | |
| 66 | N | H | -1.5943 | |
| 67 | F | H | -1.6951 | |
| 68 | N | H | -2.3685 | |
| 69 | E | H | -3.5012 | |
| 70 | K | H | -3.2758 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.5852 | |
| 74 | N | H | -2.8444 | |
| 75 | R | H | -2.0730 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.8213 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2702 | |
| 80 | T | H | -0.6881 | |
| 81 | D | H | -0.8553 | |
| 82 | S | H | -0.7407 | |
| 83 | S | H | -0.5284 | |
| 84 | T | H | -0.5701 | |
| 85 | T | H | -0.6183 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3099 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -0.9894 | |
| 91 | L | H | 0.0000 | |
| 92 | K | H | -1.4436 | |
| 93 | S | H | -1.3194 | |
| 94 | L | H | 0.0000 | |
| 95 | Q | H | -1.0255 | |
| 96 | F | H | 0.4071 | |
| 97 | D | H | -0.8596 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | 0.0200 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.3359 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.0000 | |
| 108 | D | H | 0.0000 | |
| 109 | Y | H | 0.1073 | |
| 110 | R | H | -1.1435 | |
| 111 | F | H | -0.0134 | |
| 112 | D | H | 0.0238 | |
| 113 | M | H | 0.2849 | |
| 114 | G | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.0733 | |
| 117 | Y | H | 0.2171 | |
| 118 | W | H | -0.1791 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3595 | |
| 121 | G | H | -0.4574 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.6637 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4744 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4444 | |
| 128 | S | H | -0.6644 | |
| 1 | E | L | -1.8292 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6187 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.6119 | |
| 6 | Q | L | -0.6838 | |
| 7 | S | L | -0.7106 | |
| 8 | P | L | -0.3997 | |
| 9 | A | L | -0.3504 | |
| 10 | T | L | -0.4271 | |
| 11 | L | L | -0.0870 | |
| 12 | S | L | -0.2174 | |
| 13 | L | L | -0.4929 | |
| 14 | S | L | -0.9042 | |
| 15 | P | L | -1.3490 | |
| 16 | G | L | -1.6719 | |
| 17 | E | L | -2.0541 | |
| 18 | R | L | -2.5235 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.5587 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.8041 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3652 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.2914 | |
| 27 | K | L | -2.3682 | |
| 28 | G | L | -1.8013 | |
| 29 | V | L | 0.0000 | |
| 30 | S | L | -0.6996 | |
| 31 | T | L | -0.3224 | |
| 34 | S | L | -0.2758 | |
| 35 | G | L | -0.3204 | |
| 36 | Y | L | 0.1909 | |
| 37 | S | L | 0.0000 | |
| 38 | Y | L | -0.1587 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.3647 | |
| 46 | P | L | -1.0595 | |
| 47 | G | L | -1.3922 | |
| 48 | Q | L | -2.0324 | |
| 49 | A | L | -1.2090 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.0388 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.6044 | |
| 56 | L | L | 0.0000 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | 0.2870 | |
| 66 | Y | L | 1.0957 | |
| 67 | L | L | 0.7657 | |
| 68 | E | L | -0.0867 | |
| 69 | S | L | -0.3689 | |
| 70 | G | L | -0.5681 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.2515 | |
| 74 | A | L | -0.1499 | |
| 75 | R | L | -0.6361 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.0765 | |
| 78 | G | L | -0.0457 | |
| 79 | S | L | -0.5095 | |
| 80 | G | L | -0.9967 | |
| 83 | S | L | -0.9402 | |
| 84 | G | L | -1.2442 | |
| 85 | T | L | -1.8507 | |
| 86 | D | L | -2.0051 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7358 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6017 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.2532 | |
| 93 | S | L | -1.6771 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -2.2810 | |
| 96 | P | L | -1.3600 | |
| 97 | E | L | -1.9644 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.3197 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.1782 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | H | L | 0.0000 | |
| 107 | S | L | -0.5242 | |
| 108 | R | L | -1.4920 | |
| 109 | D | L | -1.4918 | |
| 114 | L | L | -0.9371 | |
| 115 | P | L | -1.2923 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.2402 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.6464 | |
| 121 | G | L | -0.6453 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.7415 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | 0.0384 | |
| 126 | I | L | 0.9142 | |
| 127 | K | L | -0.8293 |