Project name: 5DK3

Status: done

Started: 2026-03-29 08:21:45
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Chain sequence(s) H: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-3.5852
Maximal score value
1.6963
Average score
-0.5136
Total score value
-118.6511

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4913
2 V H -0.8604
3 Q H -1.3221
4 L H 0.0000
5 V H -0.1036
6 Q H 0.0000
7 S H -0.2129
8 G H 0.1756
9 V H 1.6963
11 E H 0.8175
12 V H 1.2930
13 K H -0.6156
14 K H -1.7159
15 P H -1.3938
16 G H -1.1932
17 A H -1.2440
18 S H -1.3260
19 V H 0.0000
20 K H -1.4588
21 V H 0.0000
22 S H -0.3992
23 C H 0.0000
24 K H -0.8293
25 A H 0.0000
26 S H -0.8473
27 G H -0.9999
28 Y H -0.4562
29 T H -0.1761
30 F H 0.0000
35 T H -0.3605
36 N H -0.4091
37 Y H 0.1785
38 Y H 0.1643
39 M H 0.0000
40 Y H 0.0977
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6002
45 A H -0.9482
46 P H -0.9747
47 G H -1.2466
48 Q H -1.7521
49 G H -1.1129
50 L H 0.0000
51 E H -0.6341
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 N H -0.7491
58 P H 0.0000
59 S H -0.9709
62 N H -1.6798
63 G H -1.2341
64 G H -1.2065
65 T H -0.9704
66 N H -1.5943
67 F H -1.6951
68 N H -2.3685
69 E H -3.5012
70 K H -3.2758
71 F H 0.0000
72 K H -3.5852
74 N H -2.8444
75 R H -2.0730
76 V H 0.0000
77 T H -0.8213
78 L H 0.0000
79 T H -0.2702
80 T H -0.6881
81 D H -0.8553
82 S H -0.7407
83 S H -0.5284
84 T H -0.5701
85 T H -0.6183
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3099
89 M H 0.0000
90 E H -0.9894
91 L H 0.0000
92 K H -1.4436
93 S H -1.3194
94 L H 0.0000
95 Q H -1.0255
96 F H 0.4071
97 D H -0.8596
98 D H 0.0000
99 T H 0.0200
100 A H 0.0000
101 V H 0.3359
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H 0.0000
108 D H 0.0000
109 Y H 0.1073
110 R H -1.1435
111 F H -0.0134
112 D H 0.0238
113 M H 0.2849
114 G H 0.0000
115 F H 0.0000
116 D H -0.0733
117 Y H 0.2171
118 W H -0.1791
119 G H 0.0000
120 Q H -1.3595
121 G H -0.4574
122 T H 0.0000
123 T H 0.6637
124 V H 0.0000
125 T H 0.4744
126 V H 0.0000
127 S H -0.4444
128 S H -0.6644
1 E L -1.8292
2 I L 0.0000
3 V L 0.6187
4 L L 0.0000
5 T L -0.6119
6 Q L -0.6838
7 S L -0.7106
8 P L -0.3997
9 A L -0.3504
10 T L -0.4271
11 L L -0.0870
12 S L -0.2174
13 L L -0.4929
14 S L -0.9042
15 P L -1.3490
16 G L -1.6719
17 E L -2.0541
18 R L -2.5235
19 A L 0.0000
20 T L -0.5587
21 L L 0.0000
22 S L -0.8041
23 C L 0.0000
24 R L -2.3652
25 A L 0.0000
26 S L -1.2914
27 K L -2.3682
28 G L -1.8013
29 V L 0.0000
30 S L -0.6996
31 T L -0.3224
34 S L -0.2758
35 G L -0.3204
36 Y L 0.1909
37 S L 0.0000
38 Y L -0.1587
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3647
46 P L -1.0595
47 G L -1.3922
48 Q L -2.0324
49 A L -1.2090
50 P L 0.0000
51 R L -1.0388
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.6044
56 L L 0.0000
57 A L 0.0000
65 S L 0.2870
66 Y L 1.0957
67 L L 0.7657
68 E L -0.0867
69 S L -0.3689
70 G L -0.5681
71 V L 0.0000
72 P L -0.2515
74 A L -0.1499
75 R L -0.6361
76 F L 0.0000
77 S L -0.0765
78 G L -0.0457
79 S L -0.5095
80 G L -0.9967
83 S L -0.9402
84 G L -1.2442
85 T L -1.8507
86 D L -2.0051
87 F L 0.0000
88 T L -0.7358
89 L L 0.0000
90 T L -0.6017
91 I L 0.0000
92 S L -1.2532
93 S L -1.6771
94 L L 0.0000
95 E L -2.2810
96 P L -1.3600
97 E L -1.9644
98 D L 0.0000
99 F L -0.3197
100 A L 0.0000
101 V L -0.1782
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 S L -0.5242
108 R L -1.4920
109 D L -1.4918
114 L L -0.9371
115 P L -1.2923
116 L L 0.0000
117 T L -0.2402
118 F L 0.0000
119 G L 0.0000
120 G L -0.6464
121 G L -0.6453
122 T L 0.0000
123 K L -0.7415
124 V L 0.0000
125 E L 0.0384
126 I L 0.9142
127 K L -0.8293
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Laboratory of Theory of Biopolymers 2018