| Chain sequence(s) |
A: SNEDKYEKQKEFIKSSKEDTAAFYREAGLFYKSWGDNDEATEYFDKALSFELDQETRDAIESLRPQ
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:56)
[INFO] Main: Simulation completed successfully. (00:01:56)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | A | -2.2907 | |
| 2 | N | A | -3.6339 | |
| 3 | E | A | -4.3913 | |
| 4 | D | A | -4.6976 | |
| 5 | K | A | -4.6653 | |
| 6 | Y | A | -3.7437 | |
| 7 | E | A | -4.7472 | |
| 8 | K | A | -4.6168 | |
| 9 | Q | A | -3.0837 | |
| 10 | K | A | -3.0646 | |
| 11 | E | A | -3.3468 | |
| 12 | F | A | -1.2935 | |
| 13 | I | A | 0.0000 | |
| 14 | K | A | -2.6289 | |
| 15 | S | A | -1.8332 | |
| 16 | S | A | -2.1947 | |
| 17 | K | A | -3.1442 | |
| 18 | E | A | -3.3807 | |
| 19 | D | A | -2.9391 | |
| 20 | T | A | -1.5569 | |
| 21 | A | A | 0.0000 | |
| 22 | A | A | -0.9797 | |
| 23 | F | A | -1.3185 | |
| 24 | Y | A | 0.0000 | |
| 25 | R | A | -1.4984 | |
| 26 | E | A | -1.6544 | |
| 27 | A | A | 0.0000 | |
| 28 | G | A | 0.0000 | |
| 29 | L | A | -0.4653 | |
| 30 | F | A | -0.5121 | |
| 31 | Y | A | 0.0000 | |
| 32 | K | A | -1.5216 | |
| 33 | S | A | -0.5170 | |
| 34 | W | A | -0.5966 | |
| 35 | G | A | -1.4577 | |
| 36 | D | A | -2.1734 | |
| 37 | N | A | -3.1652 | |
| 38 | D | A | -3.4210 | |
| 39 | E | A | -2.9718 | |
| 40 | A | A | 0.0000 | |
| 41 | T | A | -3.0768 | |
| 42 | E | A | -3.4196 | |
| 43 | Y | A | -2.4371 | |
| 44 | F | A | 0.0000 | |
| 45 | D | A | -2.8885 | |
| 46 | K | A | -2.3523 | |
| 47 | A | A | 0.0000 | |
| 48 | L | A | -0.9555 | |
| 49 | S | A | -0.3810 | |
| 50 | F | A | 0.2579 | |
| 51 | E | A | -0.8366 | |
| 52 | L | A | -0.1599 | |
| 53 | D | A | -1.7770 | |
| 54 | Q | A | -3.0771 | |
| 55 | E | A | -3.5033 | |
| 56 | T | A | 0.0000 | |
| 57 | R | A | -3.5240 | |
| 58 | D | A | -3.8488 | |
| 59 | A | A | 0.0000 | |
| 60 | I | A | -2.7197 | |
| 61 | E | A | -2.7043 | |
| 62 | S | A | -1.9918 | |
| 63 | L | A | -2.0546 | |
| 64 | R | A | -2.7247 | |
| 65 | P | A | -1.7892 | |
| 66 | Q | A | -1.7597 |