| Chain sequence(s) |
A: GGGGSGGGGSGGGGS
C: GGGGSGGGGSGGGGS B: GGGGSGGGGSGGGGS E: GGGGSGGGGSGGGGS D: GGGGSGGGGSGGGGS G: GGGGSGGGGSGGGGS F: GGGGSGGGGSGGGGS H: GGGGSGGGGSGGGGS input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:04)
[INFO] Main: Simulation completed successfully. (00:00:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.1776 | |
| 2 | G | A | -1.3872 | |
| 3 | G | A | -1.3162 | |
| 4 | G | A | -0.9862 | |
| 5 | S | A | -0.8925 | |
| 6 | G | A | -0.9581 | |
| 7 | G | A | -1.1590 | |
| 8 | G | A | -1.2397 | |
| 9 | G | A | -1.0501 | |
| 10 | S | A | -0.9585 | |
| 11 | G | A | -0.9588 | |
| 12 | G | A | -1.0398 | |
| 13 | G | A | -1.3731 | |
| 14 | G | A | -1.4207 | |
| 15 | S | A | -1.1084 | |
| 1 | G | B | -1.1940 | |
| 2 | G | B | -1.3793 | |
| 3 | G | B | -1.3545 | |
| 4 | G | B | -1.0288 | |
| 5 | S | B | -0.9224 | |
| 6 | G | B | -0.9408 | |
| 7 | G | B | -1.1167 | |
| 8 | G | B | -1.2707 | |
| 9 | G | B | -1.0486 | |
| 10 | S | B | -0.9332 | |
| 11 | G | B | -0.9455 | |
| 12 | G | B | -0.9896 | |
| 13 | G | B | -1.2523 | |
| 14 | G | B | -1.3530 | |
| 15 | S | B | -0.9891 | |
| 1 | G | C | -1.4386 | |
| 2 | G | C | -1.4354 | |
| 3 | G | C | -1.4342 | |
| 4 | G | C | 0.0000 | |
| 5 | S | C | -0.8684 | |
| 6 | G | C | 0.0000 | |
| 7 | G | C | -1.0411 | |
| 8 | G | C | -1.1275 | |
| 9 | G | C | 0.0000 | |
| 10 | S | C | -0.8896 | |
| 11 | G | C | -0.9400 | |
| 12 | G | C | 0.0000 | |
| 13 | G | C | -1.2370 | |
| 14 | G | C | 0.0000 | |
| 15 | S | C | -1.1717 | |
| 1 | G | D | -1.4577 | |
| 2 | G | D | -1.4430 | |
| 3 | G | D | -1.5332 | |
| 4 | G | D | 0.0000 | |
| 5 | S | D | -0.8637 | |
| 6 | G | D | -0.9563 | |
| 7 | G | D | -1.0344 | |
| 8 | G | D | -1.1918 | |
| 9 | G | D | 0.0000 | |
| 10 | S | D | -0.8965 | |
| 11 | G | D | -1.0325 | |
| 12 | G | D | 0.0000 | |
| 13 | G | D | -1.4123 | |
| 14 | G | D | -1.5471 | |
| 15 | S | D | -1.2858 | |
| 1 | G | E | -1.4452 | |
| 2 | G | E | -1.4648 | |
| 3 | G | E | -1.6258 | |
| 4 | G | E | -1.3045 | |
| 5 | S | E | -1.0617 | |
| 6 | G | E | -1.1776 | |
| 7 | G | E | -1.1103 | |
| 8 | G | E | -1.2998 | |
| 9 | G | E | -1.3169 | |
| 10 | S | E | -1.0952 | |
| 11 | G | E | -1.3109 | |
| 12 | G | E | -1.2883 | |
| 13 | G | E | -1.4771 | |
| 14 | G | E | -1.6668 | |
| 15 | S | E | -1.1297 | |
| 1 | G | F | -1.5113 | |
| 2 | G | F | -1.4867 | |
| 3 | G | F | -1.7047 | |
| 4 | G | F | -1.3566 | |
| 5 | S | F | -1.0766 | |
| 6 | G | F | -1.2283 | |
| 7 | G | F | -1.1321 | |
| 8 | G | F | -1.2560 | |
| 9 | G | F | -1.3289 | |
| 10 | S | F | -1.1213 | |
| 11 | G | F | -1.2827 | |
| 12 | G | F | -1.2806 | |
| 13 | G | F | -1.4252 | |
| 14 | G | F | -1.5547 | |
| 15 | S | F | -1.0704 | |
| 1 | G | G | -1.4866 | |
| 2 | G | G | -1.4685 | |
| 3 | G | G | -1.5276 | |
| 4 | G | G | 0.0000 | |
| 5 | S | G | -0.8746 | |
| 6 | G | G | 0.0000 | |
| 7 | G | G | -1.0666 | |
| 8 | G | G | -1.2120 | |
| 9 | G | G | 0.0000 | |
| 10 | S | G | -1.0169 | |
| 11 | G | G | -1.0809 | |
| 12 | G | G | -1.1526 | |
| 13 | G | G | -1.4558 | |
| 14 | G | G | -1.5642 | |
| 15 | S | G | -1.2632 | |
| 1 | G | H | -1.3733 | |
| 2 | G | H | -1.3615 | |
| 3 | G | H | -1.3960 | |
| 4 | G | H | 0.0000 | |
| 5 | S | H | -0.7802 | |
| 6 | G | H | -0.9241 | |
| 7 | G | H | -1.0116 | |
| 8 | G | H | -1.1879 | |
| 9 | G | H | 0.0000 | |
| 10 | S | H | -0.8394 | |
| 11 | G | H | -0.9420 | |
| 12 | G | H | -0.9790 | |
| 13 | G | H | -1.2309 | |
| 14 | G | H | -1.5264 | |
| 15 | S | H | -1.2340 |