Project name: EAK16-II_4

Status: done

Started: 2026-06-24 06:58:18
Settings
Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:50)
Show buried residues

Minimal score value
-3.9181
Maximal score value
0.0
Average score
-2.3424
Total score value
-149.9121

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -2.4981
2 E A -3.0287
3 A A -2.0594
4 E A 0.0000
5 A A 0.0000
6 K A -3.4716
7 A A -2.9714
8 K A -3.6662
9 A A 0.0000
10 E A -3.8171
11 A A 0.0000
12 E A -3.3214
13 A A 0.0000
14 K A -3.7252
15 A A -2.4864
16 K A -2.9272
1 A B -1.8089
2 E B -2.5406
3 A B -2.5210
4 E B -3.0533
5 A B -2.3851
6 K B -3.3084
7 A B -3.3132
8 K B -3.3353
9 A B -2.8637
10 E B -3.4353
11 A B 0.0000
12 E B -3.9181
13 A B -2.8629
14 K B -3.1547
15 A B -2.8358
16 K B -2.5973
1 A C -2.3054
2 E C -3.0043
3 A C -2.0510
4 E C 0.0000
5 A C 0.0000
6 K C -3.2920
7 A C -2.5651
8 K C -3.3502
9 A C 0.0000
10 E C -2.9896
11 A C 0.0000
12 E C -3.0426
13 A C 0.0000
14 K C -3.2545
15 A C -2.2550
16 K C -2.8339
1 A D -1.6860
2 E D -2.3290
3 A D -2.2273
4 E D -2.4355
5 A D -2.2354
6 K D -3.0270
7 A D -2.9831
8 K D -2.6697
9 A D -2.7677
10 E D -3.4851
11 A D 0.0000
12 E D -3.7174
13 A D -2.8708
14 K D -3.1918
15 A D -2.8433
16 K D -2.5931
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Laboratory of Theory of Biopolymers 2018