| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK B: AEAEAKAKAEAEAKAK D: AEAEAKAKAEAEAKAK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:49)
[INFO] Main: Simulation completed successfully. (00:04:50)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -2.4981 | |
| 2 | E | A | -3.0287 | |
| 3 | A | A | -2.0594 | |
| 4 | E | A | 0.0000 | |
| 5 | A | A | 0.0000 | |
| 6 | K | A | -3.4716 | |
| 7 | A | A | -2.9714 | |
| 8 | K | A | -3.6662 | |
| 9 | A | A | 0.0000 | |
| 10 | E | A | -3.8171 | |
| 11 | A | A | 0.0000 | |
| 12 | E | A | -3.3214 | |
| 13 | A | A | 0.0000 | |
| 14 | K | A | -3.7252 | |
| 15 | A | A | -2.4864 | |
| 16 | K | A | -2.9272 | |
| 1 | A | B | -1.8089 | |
| 2 | E | B | -2.5406 | |
| 3 | A | B | -2.5210 | |
| 4 | E | B | -3.0533 | |
| 5 | A | B | -2.3851 | |
| 6 | K | B | -3.3084 | |
| 7 | A | B | -3.3132 | |
| 8 | K | B | -3.3353 | |
| 9 | A | B | -2.8637 | |
| 10 | E | B | -3.4353 | |
| 11 | A | B | 0.0000 | |
| 12 | E | B | -3.9181 | |
| 13 | A | B | -2.8629 | |
| 14 | K | B | -3.1547 | |
| 15 | A | B | -2.8358 | |
| 16 | K | B | -2.5973 | |
| 1 | A | C | -2.3054 | |
| 2 | E | C | -3.0043 | |
| 3 | A | C | -2.0510 | |
| 4 | E | C | 0.0000 | |
| 5 | A | C | 0.0000 | |
| 6 | K | C | -3.2920 | |
| 7 | A | C | -2.5651 | |
| 8 | K | C | -3.3502 | |
| 9 | A | C | 0.0000 | |
| 10 | E | C | -2.9896 | |
| 11 | A | C | 0.0000 | |
| 12 | E | C | -3.0426 | |
| 13 | A | C | 0.0000 | |
| 14 | K | C | -3.2545 | |
| 15 | A | C | -2.2550 | |
| 16 | K | C | -2.8339 | |
| 1 | A | D | -1.6860 | |
| 2 | E | D | -2.3290 | |
| 3 | A | D | -2.2273 | |
| 4 | E | D | -2.4355 | |
| 5 | A | D | -2.2354 | |
| 6 | K | D | -3.0270 | |
| 7 | A | D | -2.9831 | |
| 8 | K | D | -2.6697 | |
| 9 | A | D | -2.7677 | |
| 10 | E | D | -3.4851 | |
| 11 | A | D | 0.0000 | |
| 12 | E | D | -3.7174 | |
| 13 | A | D | -2.8708 | |
| 14 | K | D | -3.1918 | |
| 15 | A | D | -2.8433 | |
| 16 | K | D | -2.5931 |