| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGVLDVWGQGTTVTVSS
L: IQMTQSPSSLSASVGDRVTITCRASQGPTSYLAWYQQKPGKAPKLLIYATKTLQSGVPSRFSGSGSGTDFTLTISRLQPEDFATYYCQQLNSYPLTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:57)
[INFO] Main: Simulation completed successfully. (00:01:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2527 | |
| 2 | V | H | -0.4860 | |
| 3 | Q | H | -1.0816 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | -0.0711 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.6441 | |
| 8 | G | H | -0.7024 | |
| 9 | G | H | -0.3286 | |
| 11 | G | H | 0.5135 | |
| 12 | V | H | 1.5085 | |
| 13 | V | H | -0.0320 | |
| 14 | Q | H | -1.1383 | |
| 15 | P | H | -1.8292 | |
| 16 | G | H | -2.1155 | |
| 17 | R | H | -2.6661 | |
| 18 | S | H | -1.9165 | |
| 19 | L | H | -1.0906 | |
| 20 | R | H | -1.6869 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.4908 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.3957 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.6465 | |
| 27 | G | H | -0.7572 | |
| 28 | F | H | -0.3786 | |
| 29 | T | H | -0.4049 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.0440 | |
| 36 | N | H | -1.0279 | |
| 37 | Y | H | 0.1015 | |
| 38 | G | H | -0.0839 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.8935 | |
| 45 | A | H | -1.2634 | |
| 46 | P | H | -1.0298 | |
| 47 | G | H | -1.4732 | |
| 48 | K | H | -2.2870 | |
| 49 | G | H | -1.4803 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.1035 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.1531 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.6554 | |
| 58 | Y | H | -0.1344 | |
| 59 | D | H | -1.6560 | |
| 62 | G | H | -1.2329 | |
| 63 | S | H | -1.3179 | |
| 64 | N | H | -1.6634 | |
| 65 | K | H | -1.0164 | |
| 66 | Y | H | -0.0978 | |
| 67 | Y | H | -0.4885 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.2407 | |
| 70 | S | H | -1.7869 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.5014 | |
| 74 | G | H | -1.7301 | |
| 75 | R | H | -1.2659 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7853 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4854 | |
| 80 | R | H | -1.0726 | |
| 81 | D | H | -1.8137 | |
| 82 | N | H | -1.8337 | |
| 83 | S | H | -1.5579 | |
| 84 | K | H | -2.3573 | |
| 85 | N | H | -1.6552 | |
| 86 | T | H | 0.0000 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.5167 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.0472 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.8487 | |
| 93 | S | H | -1.7951 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.6343 | |
| 96 | A | H | -1.7213 | |
| 97 | E | H | -2.3053 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6967 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0715 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0012 | |
| 107 | G | H | 0.1684 | |
| 108 | V | H | 0.5386 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.6201 | |
| 117 | V | H | -0.2061 | |
| 118 | W | H | -0.6589 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.6128 | |
| 121 | G | H | -0.8516 | |
| 122 | T | H | -0.4126 | |
| 123 | T | H | -0.0635 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1144 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4085 | |
| 128 | S | H | -0.1786 | |
| 2 | I | L | -0.2885 | |
| 3 | Q | L | -1.4864 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.2524 | |
| 6 | Q | L | -0.9206 | |
| 7 | S | L | -0.7003 | |
| 8 | P | L | -0.5393 | |
| 9 | S | L | -0.6923 | |
| 10 | S | L | -0.8294 | |
| 11 | L | L | -0.4571 | |
| 12 | S | L | -0.8590 | |
| 13 | A | L | -0.9690 | |
| 14 | S | L | -1.0094 | |
| 15 | V | L | -0.3396 | |
| 16 | G | L | -1.3719 | |
| 17 | D | L | -2.2228 | |
| 18 | R | L | -2.8652 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5912 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | 0.0000 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.7207 | |
| 25 | A | L | -1.9839 | |
| 26 | S | L | -1.6362 | |
| 27 | Q | L | -1.9365 | |
| 28 | G | L | -1.5070 | |
| 29 | P | L | -0.4466 | |
| 36 | T | L | -0.2857 | |
| 37 | S | L | -0.2636 | |
| 38 | Y | L | 0.7059 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.4748 | |
| 46 | P | L | -1.0964 | |
| 47 | G | L | -1.6532 | |
| 48 | K | L | -2.5492 | |
| 49 | A | L | -1.6327 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.7499 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2522 | |
| 56 | A | L | 0.0343 | |
| 57 | T | L | 0.0000 | |
| 65 | K | L | -1.5715 | |
| 66 | T | L | -0.5908 | |
| 67 | L | L | -0.0809 | |
| 68 | Q | L | -0.5073 | |
| 69 | S | L | -0.4344 | |
| 70 | G | L | -0.5115 | |
| 71 | V | L | -0.3595 | |
| 72 | P | L | -0.3552 | |
| 74 | S | L | -0.4214 | |
| 75 | R | L | -1.2348 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6716 | |
| 78 | G | L | -0.8260 | |
| 79 | S | L | -1.1709 | |
| 80 | G | L | -1.4004 | |
| 83 | S | L | -0.9890 | |
| 84 | G | L | -1.1890 | |
| 85 | T | L | -2.0026 | |
| 86 | D | L | -2.7490 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.9956 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.8218 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.1706 | |
| 93 | R | L | -2.7979 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.1496 | |
| 96 | P | L | -1.0906 | |
| 97 | E | L | -1.6875 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.4919 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6410 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | L | L | 0.6616 | |
| 108 | N | L | 0.2035 | |
| 109 | S | L | 0.6165 | |
| 114 | Y | L | 1.1359 | |
| 115 | P | L | 0.3029 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.1875 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.1867 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.2451 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.4283 | |
| 126 | I | L | -0.8517 | |
| 127 | K | L | -1.5917 |