Project name: IL6_Nanobody14

Status: done

Started: 2025-07-23 08:21:21
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGSTKPQPGQGGWFRQAPGQGLEAVAVEGPTPEDRAIAGTGPPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAWHPGPGITAAELPEEATWGQGTLVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:01)
Show buried residues

Minimal score value
-3.475
Maximal score value
1.6863
Average score
-0.7015
Total score value
-87.6912

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4559
2 V A -1.0063
3 Q A -1.2179
4 L A 0.0000
5 V A 0.9227
6 E A 0.0000
7 S A -0.2240
8 G A -0.6740
9 G A 0.0756
10 G A 0.8089
11 L A 1.3934
12 V A -0.0652
13 Q A -1.3607
14 P A -1.7937
15 G A -1.5753
16 G A -1.2247
17 S A -1.4274
18 L A -1.1659
19 R A -2.3578
20 L A 0.0000
21 S A -0.5360
22 C A 0.0000
23 A A -0.1213
24 A A -0.4655
25 S A -0.8366
26 G A -1.0625
27 S A -1.1354
28 T A -1.2048
29 K A -2.2825
30 P A -2.0705
31 Q A -2.2906
32 P A -1.3292
33 G A -1.0743
34 Q A 0.0000
35 G A 0.0000
36 G A 0.0000
37 W A 0.0000
38 F A 0.0000
39 R A 0.0000
40 Q A -0.9667
41 A A -1.1421
42 P A -1.1872
43 G A -1.3512
44 Q A -1.9694
45 G A -1.4722
46 L A -0.8714
47 E A -1.6505
48 A A -0.8577
49 V A 0.0000
50 A A 0.0000
51 V A 0.0000
52 E A 0.0000
53 G A 0.0000
54 P A 0.0000
55 T A -1.3496
56 P A -1.9593
57 E A -3.4750
58 D A -3.3732
59 R A -2.8350
60 A A -0.7797
61 I A -0.0283
62 A A -0.1572
63 G A -0.3966
64 T A -0.5179
65 G A 0.0000
66 P A -0.2845
67 P A -0.5116
68 R A -0.7816
69 F A 0.0000
70 T A -0.9414
71 I A 0.0000
72 S A -1.0003
73 R A -1.3066
74 D A -1.6994
75 N A -2.1469
76 S A -1.7006
77 K A -2.2859
78 N A -1.9001
79 T A 0.0000
80 L A 0.0000
81 Y A -0.7874
82 L A 0.0000
83 Q A -1.8544
84 M A 0.0000
85 N A -1.5504
86 S A -1.3721
87 L A 0.0000
88 R A -2.9310
89 A A -1.9986
90 E A -2.4569
91 D A 0.0000
92 T A -0.5507
93 A A 0.0000
94 V A 0.7844
95 Y A 0.0000
96 Y A 0.2689
97 C A 0.0000
98 A A 0.0000
99 W A 0.0000
100 H A -0.7360
101 P A -1.0202
102 G A -0.7116
103 P A -0.7199
104 G A -0.2469
105 I A 1.2827
106 T A 0.1767
107 A A -0.2299
108 A A 0.0000
109 E A -2.0815
110 L A -0.6914
111 P A -1.0715
112 E A -1.9559
113 E A 0.0000
114 A A -0.2293
115 T A -0.4398
116 W A 0.1663
117 G A -0.1834
118 Q A -0.9053
119 G A 0.0628
120 T A 0.5987
121 L A 1.6863
122 V A 0.0000
123 T A 0.3161
124 V A 0.0000
125 S A -0.6535
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Laboratory of Theory of Biopolymers 2018