Project name: obj1 [mutate: ID93C, WG110C]

Status: done

Started: 2025-02-10 09:16:51
Settings
Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues ID93C,WG110C
Energy difference between WT (input) and mutated protein (by FoldX) 7.0587 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:22)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:31)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-3.2333
Maximal score value
1.5458
Average score
-0.712
Total score value
-85.4439

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0045
2 V C -1.0687
3 Q C -1.4504
4 L C 0.0000
5 V C 0.4080
6 E C 0.0991
7 S C -0.4188
8 G C -0.8205
9 G C -0.1804
10 G C 0.7896
11 L C 1.4417
12 V C -0.0326
13 Q C -1.3365
14 P C -1.4883
15 G C -1.4134
16 G C -0.9785
17 S C -1.2309
18 L C -0.9601
19 R C -2.1462
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.2033
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2525
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.0748
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.7919
40 A C -1.3163
41 P C -1.5172
42 G C -1.4321
43 K C -2.1212
44 G C -1.0102
45 L C 0.3571
46 E C -0.3398
47 W C 0.3708
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3562
61 A C -1.1390
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6696
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.4716
88 A C -1.8886
89 E C -2.3438
90 D C 0.0000
91 T C -0.7089
92 A C 0.0000
93 D C -0.2952 mutated: ID93C
94 Y C 0.0000
95 Y C 0.1046
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -2.9645
101 D C -3.2333
102 G C -2.0112
103 F C -1.1496
104 N C -2.3467
105 K C -3.0477
106 G C -1.5950
107 F C -0.5697
108 D C -1.0553
109 Y C -0.5895
110 G C -0.4967 mutated: WG110C
111 G C -0.6398
112 Q C -1.3105
113 G C -0.4898
114 T C 0.1150
115 L C 1.1116
116 V C 0.0000
117 T C 0.1334
118 V C 0.0000
119 S C -0.7739
120 S C -1.0598
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018