Project name: GP41 Intein [mutate: VI22A, LI36A]

Status: done

Started: 2026-07-17 16:36:49
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Chain sequence(s) A: SGGALDLKTQVQTPQGMKEISNIQVGDLVLSNTGYNEVLNVFPKSKKKSYKITLEDGKEIICSEEHLFPTQTGEMNISGGLKEGMCLYVKEMMLKKILKIEELDERELIDIEVSGNHLFYANDILTHN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VI22A,LI36A
Energy difference between WT (input) and mutated protein (by FoldX) 0.621997 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:41)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:48)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:24)
Show buried residues

Minimal score value
-3.8259
Maximal score value
1.1217
Average score
-0.9673
Total score value
-123.8092

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
-2 S A -0.5652
-1 G A -0.6340
0 G A 0.0000
1 A A 0.0000
2 L A 0.0000
3 D A 0.0000
4 L A -1.5694
5 K A -2.3309
6 T A 0.0000
7 Q A -1.9272
8 V A 0.0000
9 Q A -0.7728
10 T A 0.0000
11 P A -0.7407
12 Q A -1.3794
13 G A -0.7766
14 M A -0.5030
15 K A -1.6392
16 E A -2.3467
17 I A 0.0000
18 S A -1.7416
19 N A -2.1671
20 I A 0.0000
21 Q A -0.6895
22 I A 1.1217 mutated: VI22A
23 G A -0.0387
24 D A -0.6757
25 L A -0.2548
26 V A 0.0000
27 L A -0.0807
28 S A 0.0000
29 N A -0.9515
30 T A -0.4326
31 G A -0.2387
32 Y A 0.0543
33 N A 0.0000
34 E A -1.0199
35 V A 0.0000
36 I A 0.7281 mutated: LI36A
37 N A 0.0511
38 V A 0.1901
39 F A 0.0331
40 P A -0.9966
41 K A -2.2845
42 S A -2.4655
43 K A -3.6433
44 K A -2.8856
45 K A -2.7284
46 S A 0.0000
47 Y A -1.9133
48 K A -1.7526
49 I A 0.0000
50 T A -2.1183
51 L A 0.0000
52 E A -2.4359
53 D A -2.1276
54 G A -1.7818
55 K A -2.1304
56 E A -2.2035
57 I A 0.0000
58 I A -0.7366
59 C A 0.0000
60 S A 0.0000
61 E A -1.0313
62 E A -0.9327
63 H A 0.0000
64 L A -0.5939
65 F A 0.0000
66 P A -1.0162
67 T A 0.0000
68 Q A -1.4185
69 T A -1.0832
70 G A -1.4194
71 E A -2.0644
72 M A -1.3164
73 N A -1.0376
74 I A -0.6395
75 S A -0.8391
76 G A -1.1063
77 G A -1.0533
78 L A 0.0000
79 K A -2.8211
80 E A -2.9900
81 G A -2.0159
82 M A -1.2766
83 C A -0.9374
84 L A 0.0000
85 Y A -0.3170
86 V A 0.0000
87 K A -2.0380
88 E A -2.0994
89 M A -0.3217
90 M A 0.4158
91 L A 0.1053
92 K A -0.7367
93 K A -2.0914
94 I A 0.0000
95 L A -1.6919
96 K A -2.9573
97 I A -2.4365
98 E A -2.9116
99 E A -3.1076
100 L A -2.1541
101 D A -3.3468
102 E A -3.8259
103 R A -3.1153
104 E A -3.1851
105 L A 0.0000
106 I A 0.0000
107 D A 0.0000
108 I A 0.0000
109 E A -0.5061
110 V A 0.0000
111 S A -0.8150
112 G A -1.0656
113 N A -1.0046
114 H A -1.2545
115 L A 0.0000
116 F A 0.0000
117 Y A 0.0000
118 A A 0.0000
119 N A -1.6432
120 D A -1.9669
121 I A 0.0000
122 L A 0.0000
123 T A 0.0000
124 H A -0.6439
125 N A 0.0000
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Laboratory of Theory of Biopolymers 2018