Project name: REST_test

Status: done

Started: 2025-03-08 01:21:18
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Chain sequence(s) A: IQKVQDDTKTLIKTIVTRINDILDFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLPEASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues KV5A,VY6A
Energy difference between WT (input) and mutated protein (by FoldX) 1.0351 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:18)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:43)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:06)
Show buried residues

Minimal score value
-2.12
Maximal score value
1.9398
Average score
-0.2155
Total score value
-28.0157

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 I A 0.9446
4 Q A -0.6922
5 V A 1.4121 mutated: KV5A
6 Y A 0.7900 mutated: VY6A
7 Q A -0.6521
8 D A -1.9605
9 D A -2.1200
10 T A 0.0000
11 K A -0.6191
12 T A -0.1459
13 L A 0.1898
14 I A 0.0000
15 K A -1.4662
16 T A -0.2966
17 I A 0.0000
18 V A 0.1788
19 T A -0.1159
20 R A -0.4970
21 I A 0.0000
22 N A -1.6096
23 D A -1.6579
24 I A 1.6828
39 L A 0.5789
40 D A -1.2592
41 F A 1.6552
42 I A 0.5878
43 P A -0.2169
44 G A -0.1449
45 L A 0.0000
46 H A -0.9957
47 P A 0.0620
48 I A 1.6195
49 L A 1.1390
50 T A 0.1251
51 L A 0.0000
52 S A -0.1904
53 K A -0.9566
54 M A 0.0000
55 D A 0.0000
56 Q A -0.3299
57 T A 0.0000
58 L A 0.0000
59 A A 0.0065
60 V A 0.0000
61 Y A 0.0000
62 Q A -0.1756
63 Q A -0.3390
64 I A 0.0000
65 L A 0.0000
66 T A -0.1098
67 S A -0.2043
68 M A 0.0315
69 P A -0.2637
70 S A -0.5506
71 R A -1.9079
72 N A -0.5861
73 V A 0.0000
74 I A 1.2697
75 Q A -0.3204
76 I A 0.0000
77 S A -0.1195
78 N A -1.2771
79 D A 0.0000
80 L A 0.0000
81 E A -2.0533
82 N A -1.6067
83 L A 0.0000
84 R A -0.6981
85 D A -1.8197
86 L A -0.1246
87 L A 0.0000
88 H A -0.3930
89 V A 0.4944
90 L A 0.0000
91 A A 0.0000
92 F A 1.9398
93 S A 0.1604
94 K A -0.5709
95 S A -0.0777
96 C A -0.0603
97 H A -0.9280
98 L A -0.0555
99 P A -0.5629
100 E A -1.8644
101 A A -0.3548
102 S A -0.2969
103 G A -0.4289
104 L A -0.0173
105 E A -1.7489
106 T A -0.3017
107 L A 0.0267
108 D A -1.7620
109 S A -0.5411
110 L A 0.0000
111 G A -0.3253
112 G A -0.4196
113 V A 0.4147
114 L A 0.0000
115 E A -1.8170
116 A A -0.3612
117 S A -0.2956
118 G A -0.3191
119 Y A 0.9053
120 S A 0.0571
121 T A -0.3332
122 E A -1.3754
123 V A 0.4199
124 V A 0.0000
125 A A 0.0000
126 L A 0.0000
127 S A -0.0610
128 R A -0.2310
129 L A 0.0000
130 Q A -0.2796
131 G A -0.2139
132 S A 0.0000
133 L A 0.0000
134 Q A -1.1679
135 D A -0.6128
136 M A 0.0000
137 L A 0.3109
138 W A 1.2193
139 Q A 0.0000
140 L A 0.0000
141 D A -1.5009
142 L A 1.1754
143 S A 0.0690
144 P A 0.0000
145 G A -0.3295
146 C A 0.2084
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Laboratory of Theory of Biopolymers 2018