| Chain sequence(s) |
A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWFKQRPGQEREGIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
B: RLLEMEFEERKRAAE input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:28)
[INFO] Main: Simulation completed successfully. (00:01:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4142 | |
| 2 | V | A | -0.8378 | |
| 3 | Q | A | -1.3293 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7474 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -1.2189 | |
| 8 | G | A | -1.0715 | |
| 9 | P | A | -0.5718 | |
| 10 | E | A | -0.4615 | |
| 11 | L | A | 0.7958 | |
| 12 | V | A | -0.2878 | |
| 13 | K | A | -1.6573 | |
| 14 | P | A | -1.5833 | |
| 15 | G | A | -1.1007 | |
| 16 | A | A | -0.8588 | |
| 17 | S | A | -1.0795 | |
| 18 | V | A | 0.0000 | |
| 19 | R | A | -2.2272 | |
| 20 | M | A | 0.0000 | |
| 21 | S | A | -0.9742 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -1.8257 | |
| 24 | T | A | 0.0000 | |
| 25 | S | A | -1.1599 | |
| 26 | G | A | -0.9331 | |
| 27 | Y | A | -0.5067 | |
| 28 | T | A | -0.5253 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -1.5105 | |
| 31 | D | A | -0.9569 | |
| 32 | Y | A | -0.4443 | |
| 33 | V | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | S | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.2184 | |
| 38 | K | A | 0.0000 | |
| 39 | Q | A | -1.6389 | |
| 40 | R | A | -1.8636 | |
| 41 | P | A | -1.3491 | |
| 42 | G | A | -1.6240 | |
| 43 | Q | A | -2.5346 | |
| 44 | E | A | -3.2610 | |
| 45 | R | A | -2.8395 | |
| 46 | E | A | -2.1153 | |
| 47 | G | A | -1.2528 | |
| 48 | I | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | E | A | -0.3414 | |
| 51 | I | A | 0.0000 | |
| 52 | F | A | 0.0000 | |
| 53 | P | A | 0.0000 | |
| 54 | R | A | -2.4516 | |
| 55 | T | A | -1.2486 | |
| 56 | G | A | -1.2449 | |
| 57 | S | A | -0.4952 | |
| 58 | T | A | -0.1274 | |
| 59 | Y | A | -0.2480 | |
| 60 | Y | A | -1.1096 | |
| 61 | N | A | -1.9581 | |
| 62 | E | A | -3.0225 | |
| 63 | N | A | -2.7875 | |
| 64 | F | A | 0.0000 | |
| 65 | K | A | -2.5470 | |
| 66 | A | A | -1.3479 | |
| 67 | T | A | -0.8879 | |
| 68 | A | A | 0.0000 | |
| 69 | T | A | -0.7486 | |
| 70 | L | A | 0.0000 | |
| 71 | T | A | -0.4837 | |
| 72 | A | A | -1.2089 | |
| 73 | D | A | -1.8282 | |
| 74 | K | A | -2.1115 | |
| 75 | S | A | -1.1936 | |
| 76 | S | A | -1.3285 | |
| 77 | N | A | -1.6811 | |
| 78 | T | A | 0.0000 | |
| 79 | A | A | 0.0000 | |
| 80 | Y | A | -0.6741 | |
| 81 | M | A | 0.0000 | |
| 82 | Q | A | -1.4727 | |
| 83 | L | A | 0.0000 | |
| 84 | S | A | -0.7858 | |
| 85 | S | A | -0.7282 | |
| 86 | L | A | 0.0000 | |
| 87 | T | A | -1.3642 | |
| 88 | S | A | -1.5577 | |
| 89 | E | A | -2.1130 | |
| 90 | D | A | -1.3230 | |
| 91 | S | A | -0.8314 | |
| 92 | A | A | -0.6555 | |
| 93 | A | A | -0.4818 | |
| 94 | Y | A | 0.0000 | |
| 95 | F | A | -0.1275 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | I | A | 0.0000 | |
| 100 | T | A | 0.0000 | |
| 101 | S | A | 0.2362 | |
| 102 | V | A | 1.2060 | |
| 103 | D | A | -0.4782 | |
| 104 | W | A | 0.5077 | |
| 105 | A | A | 0.1851 | |
| 106 | M | A | 0.1805 | |
| 107 | E | A | -0.5305 | |
| 108 | Y | A | 0.2339 | |
| 109 | W | A | 0.0206 | |
| 110 | G | A | 0.0000 | |
| 111 | Q | A | -1.3600 | |
| 112 | G | A | -0.7477 | |
| 113 | T | A | 0.0000 | |
| 114 | S | A | -0.4890 | |
| 115 | V | A | 0.0000 | |
| 116 | T | A | -0.2993 | |
| 117 | V | A | 0.0000 | |
| 118 | S | A | -0.5905 | |
| 119 | S | A | -0.6896 | |
| 1 | R | B | -1.9668 | |
| 2 | L | B | 0.0000 | |
| 3 | L | B | -0.7877 | |
| 4 | E | B | -1.6717 | |
| 5 | M | B | -1.1349 | |
| 6 | E | B | 0.0000 | |
| 7 | F | B | -0.5616 | |
| 8 | E | B | -2.1719 | |
| 9 | E | B | -2.2837 | |
| 10 | R | B | -2.5012 | |
| 11 | K | B | -3.1682 | |
| 12 | R | B | -3.4985 | |
| 13 | A | B | -2.1916 | |
| 14 | A | B | -2.1605 | |
| 15 | E | B | -2.8043 |