Project name: mutVHL1

Status: done

Started: 2026-03-23 07:45:51
Settings
Chain sequence(s) A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWFKQRPGQEREGIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
B: RLLEMEFEERKRAAE
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-3.4985
Maximal score value
1.206
Average score
-0.8673
Total score value
-116.219

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4142
2 V A -0.8378
3 Q A -1.3293
4 L A 0.0000
5 Q A -1.7474
6 Q A 0.0000
7 S A -1.2189
8 G A -1.0715
9 P A -0.5718
10 E A -0.4615
11 L A 0.7958
12 V A -0.2878
13 K A -1.6573
14 P A -1.5833
15 G A -1.1007
16 A A -0.8588
17 S A -1.0795
18 V A 0.0000
19 R A -2.2272
20 M A 0.0000
21 S A -0.9742
22 C A 0.0000
23 K A -1.8257
24 T A 0.0000
25 S A -1.1599
26 G A -0.9331
27 Y A -0.5067
28 T A -0.5253
29 F A 0.0000
30 T A -1.5105
31 D A -0.9569
32 Y A -0.4443
33 V A 0.0000
34 I A 0.0000
35 S A 0.0000
36 W A 0.0000
37 F A -0.2184
38 K A 0.0000
39 Q A -1.6389
40 R A -1.8636
41 P A -1.3491
42 G A -1.6240
43 Q A -2.5346
44 E A -3.2610
45 R A -2.8395
46 E A -2.1153
47 G A -1.2528
48 I A 0.0000
49 G A 0.0000
50 E A -0.3414
51 I A 0.0000
52 F A 0.0000
53 P A 0.0000
54 R A -2.4516
55 T A -1.2486
56 G A -1.2449
57 S A -0.4952
58 T A -0.1274
59 Y A -0.2480
60 Y A -1.1096
61 N A -1.9581
62 E A -3.0225
63 N A -2.7875
64 F A 0.0000
65 K A -2.5470
66 A A -1.3479
67 T A -0.8879
68 A A 0.0000
69 T A -0.7486
70 L A 0.0000
71 T A -0.4837
72 A A -1.2089
73 D A -1.8282
74 K A -2.1115
75 S A -1.1936
76 S A -1.3285
77 N A -1.6811
78 T A 0.0000
79 A A 0.0000
80 Y A -0.6741
81 M A 0.0000
82 Q A -1.4727
83 L A 0.0000
84 S A -0.7858
85 S A -0.7282
86 L A 0.0000
87 T A -1.3642
88 S A -1.5577
89 E A -2.1130
90 D A -1.3230
91 S A -0.8314
92 A A -0.6555
93 A A -0.4818
94 Y A 0.0000
95 F A -0.1275
96 C A 0.0000
97 A A 0.0000
98 F A 0.0000
99 I A 0.0000
100 T A 0.0000
101 S A 0.2362
102 V A 1.2060
103 D A -0.4782
104 W A 0.5077
105 A A 0.1851
106 M A 0.1805
107 E A -0.5305
108 Y A 0.2339
109 W A 0.0206
110 G A 0.0000
111 Q A -1.3600
112 G A -0.7477
113 T A 0.0000
114 S A -0.4890
115 V A 0.0000
116 T A -0.2993
117 V A 0.0000
118 S A -0.5905
119 S A -0.6896
1 R B -1.9668
2 L B 0.0000
3 L B -0.7877
4 E B -1.6717
5 M B -1.1349
6 E B 0.0000
7 F B -0.5616
8 E B -2.1719
9 E B -2.2837
10 R B -2.5012
11 K B -3.1682
12 R B -3.4985
13 A B -2.1916
14 A B -2.1605
15 E B -2.8043
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Laboratory of Theory of Biopolymers 2018