Project name: 3-g4s-5r2

Status: done

Started: 2025-03-06 08:21:11
Settings
Chain sequence(s) A: FSRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNSPAVYLLDGLRAQDDYNGWDINTPAFEWYYQSGLSIVMPVGGQSSFYSDWYSPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGSAAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGMGPSLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGANIPAEFLENFVRSSNLKFQDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAGGGGGSFAVTNDGVI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:09)
Show buried residues

Minimal score value
-2.8253
Maximal score value
2.5577
Average score
-0.4267
Total score value
-127.5833

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.4301
2 S A -0.1444
3 R A -1.6744
4 P A -1.0648
5 G A -0.9512
6 L A -0.5343
7 P A -0.1609
8 V A 0.0808
9 E A -0.2885
10 Y A 0.6205
11 L A 0.0000
12 Q A -1.8230
13 V A 0.0000
14 P A -1.6438
15 S A 0.0000
16 P A -1.0254
17 S A -0.7157
18 M A 0.0000
19 G A -1.3893
20 R A -2.0312
21 D A -2.7560
22 I A 0.0000
23 K A -1.3564
24 V A 0.0000
25 Q A 0.0000
26 F A 0.0000
27 Q A 0.0000
28 S A -0.9115
29 G A -1.0870
30 G A -1.7603
31 N A -2.3807
32 N A -2.3691
33 S A 0.0000
34 P A 0.0000
35 A A 0.0000
36 V A 0.0000
37 Y A 0.0000
38 L A 0.0000
39 L A 0.0000
40 D A 0.0000
41 G A 0.0000
42 L A -0.8776
43 R A -2.1557
44 A A 0.0000
45 Q A -2.2727
46 D A -2.8253
47 D A -1.9236
48 Y A -0.3206
49 N A 0.0000
50 G A 0.0000
51 W A 0.0000
52 D A 0.0000
53 I A 0.8680
54 N A -0.0133
55 T A 0.0000
56 P A -0.0388
57 A A 0.0000
58 F A 0.0000
59 E A -0.3852
60 W A -0.1481
61 Y A 0.0000
62 Y A 0.1005
63 Q A -1.0351
64 S A 0.0000
65 G A -1.1834
66 L A 0.0000
67 S A 0.0000
68 I A 0.0000
69 V A 0.0000
70 M A 0.0000
71 P A 0.0000
72 V A 0.0000
73 G A 0.0000
74 G A 0.0000
75 Q A -1.1665
76 S A 0.0000
77 S A 0.0000
78 F A 0.0000
79 Y A 0.0000
80 S A 0.0000
81 D A -0.6056
82 W A 0.0000
83 Y A 0.9549
84 S A 0.0933
85 P A -0.1508
86 A A 0.0000
87 C A -0.4984
88 G A -1.3236
89 K A -1.9788
90 A A -0.8604
91 G A -0.5411
92 C A 0.0841
93 Q A -0.5382
94 T A -0.4636
95 Y A 0.0000
96 K A -0.8509
97 W A 0.0000
98 E A -0.5659
99 T A -0.5062
100 F A 0.0000
101 L A 0.0000
102 T A -0.3698
103 S A -0.5210
104 E A -0.6778
105 L A 0.0000
106 P A 0.0000
107 Q A -1.4563
108 W A -0.8509
109 L A 0.0000
110 S A -1.3284
111 A A -0.8673
112 N A -1.2600
113 R A -1.6003
114 A A -1.6707
115 V A 0.0000
116 K A -1.3686
117 P A -0.9956
118 T A -0.7326
119 G A -0.4597
120 S A 0.0000
121 A A 0.0000
122 A A 0.0000
123 I A 0.0000
124 G A 0.0000
125 L A 0.0000
126 S A 0.0973
127 M A 0.0000
128 A A 0.0000
129 G A 0.0000
130 S A 0.0000
131 S A 0.0000
132 A A 0.0000
133 M A 0.0000
134 I A 0.0000
135 L A 0.0000
136 A A 0.0000
137 A A 0.0000
138 Y A -0.2371
139 H A -0.4249
140 P A -0.9535
141 Q A -1.2708
142 Q A -0.7345
143 F A 0.0000
144 I A -0.2791
145 Y A 0.0000
146 A A 0.0000
147 G A 0.0000
148 S A 0.0000
149 L A 0.0000
150 S A 0.0000
151 A A 0.0000
152 L A 0.1244
153 L A 0.0000
154 D A -0.8218
155 P A 0.0000
156 S A -1.1096
157 Q A -1.0155
158 G A -0.2972
159 M A 0.6682
160 G A 0.0000
161 P A 0.1572
162 S A 0.5847
163 L A 1.0333
164 I A 0.0000
165 G A -0.0136
166 L A 0.7135
167 A A -0.3000
168 M A 0.0000
169 G A -1.4577
170 D A -1.9736
171 A A 0.0000
172 G A 0.0000
173 G A -1.8177
174 Y A 0.0000
175 K A -1.6964
176 A A -0.7294
177 A A -0.6460
178 D A -0.4506
179 M A 0.0000
180 W A 0.0000
181 G A 0.0000
182 P A -0.6351
183 S A -0.9091
184 S A -0.8726
185 D A -1.1199
186 P A -1.1844
187 A A -0.8494
188 W A 0.0000
189 E A -2.1599
190 R A -1.3844
191 N A 0.0000
192 D A 0.0000
193 P A 0.0000
194 T A -1.1226
195 Q A -1.3382
196 Q A 0.0000
197 I A 0.0000
198 P A -0.9769
199 K A -1.2972
200 L A 0.0000
201 V A -1.2351
202 A A -0.9448
203 N A -1.4768
204 N A -1.8296
205 T A 0.0000
206 R A -0.8213
207 L A 0.0000
208 W A 0.0000
209 V A 0.0000
210 Y A 0.0000
211 C A 0.0000
212 G A 0.0000
213 N A -0.7302
214 G A 0.0000
215 T A -0.7922
216 P A -1.1410
217 N A -1.4715
218 E A -1.8949
219 L A -0.8080
220 G A -0.9986
221 G A -0.7513
222 A A -0.4893
223 N A -0.0264
224 I A 1.7582
225 P A 0.8493
226 A A 0.0000
227 E A 0.3699
228 F A 1.8354
229 L A 1.1993
230 E A 0.0000
231 N A -0.5829
232 F A 0.4956
233 V A 0.0000
234 R A -0.5191
235 S A -0.5295
236 S A 0.0000
237 N A 0.0000
238 L A -0.4386
239 K A -1.7913
240 F A 0.0000
241 Q A -1.4374
242 D A -2.4813
243 A A -1.6522
244 Y A 0.0000
245 N A -2.1724
246 A A -1.2136
247 A A -0.9133
248 G A -1.0525
249 G A -1.6803
250 H A -1.6323
251 N A -1.2793
252 A A -0.5220
253 V A 0.3153
254 F A 0.6080
255 N A 0.1165
256 F A 0.1785
257 P A -0.2718
258 P A -0.6015
259 N A -0.9121
260 G A 0.0000
261 T A 0.0000
262 H A -0.3835
263 S A -0.5740
264 W A -0.4184
265 E A -1.0448
266 Y A 0.0000
267 W A 0.0000
268 G A 0.0000
269 A A -0.4627
270 Q A -0.5898
271 L A 0.0000
272 N A -0.9466
273 A A -0.6397
274 M A 0.0000
275 K A -1.0802
276 G A -1.0949
277 D A -0.8888
278 L A 0.0000
279 Q A -1.1111
280 S A -0.9571
281 S A -0.6029
282 L A 0.0000
283 G A -1.0087
284 A A -1.1022
285 G A -1.3940
286 G A -1.2808
287 G A -1.6753
288 G A -1.2869
289 G A -0.3906
290 S A 0.6280
291 F A 2.1836
292 A A 1.5107
293 V A 1.6936
294 T A -0.1610
295 N A -1.5451
296 D A -1.8209
297 G A -0.3466
298 V A 1.9423
299 I A 2.5577
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Laboratory of Theory of Biopolymers 2018