| Chain sequence(s) |
A: YPVRCLLPSAHGSCADWAARWYFVASVGQCNRFWYGGCHGNANNFASEQECMSSCQGS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:19)
[INFO] Main: Simulation completed successfully. (00:00:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Y | A | 1.4912 | |
| 2 | P | A | 1.2529 | |
| 3 | V | A | 2.3053 | |
| 4 | R | A | 0.7971 | |
| 5 | C | A | 0.0000 | |
| 6 | L | A | 2.3935 | |
| 7 | L | A | 1.2845 | |
| 8 | P | A | 0.1541 | |
| 9 | S | A | -0.2515 | |
| 10 | A | A | -0.5831 | |
| 11 | H | A | -0.6262 | |
| 12 | G | A | -0.7599 | |
| 13 | S | A | -0.4754 | |
| 14 | C | A | -0.1462 | |
| 15 | A | A | -0.3770 | |
| 16 | D | A | -1.0275 | |
| 17 | W | A | 0.3800 | |
| 18 | A | A | 0.2242 | |
| 19 | A | A | -0.1715 | |
| 20 | R | A | -0.8026 | |
| 21 | W | A | -1.2100 | |
| 22 | Y | A | -0.5010 | |
| 23 | F | A | 0.0000 | |
| 24 | V | A | 0.5662 | |
| 25 | A | A | 0.9716 | |
| 26 | S | A | 0.7701 | |
| 27 | V | A | 1.4078 | |
| 28 | G | A | 0.4089 | |
| 29 | Q | A | -0.3543 | |
| 30 | C | A | 0.0000 | |
| 31 | N | A | -1.2885 | |
| 32 | R | A | -1.9276 | |
| 33 | F | A | 0.0000 | |
| 34 | W | A | 0.5571 | |
| 35 | Y | A | -0.0882 | |
| 36 | G | A | 0.0000 | |
| 37 | G | A | -0.5667 | |
| 38 | C | A | -0.5190 | |
| 39 | H | A | -1.1419 | |
| 40 | G | A | -1.0469 | |
| 41 | N | A | -0.8184 | |
| 42 | A | A | -0.0201 | |
| 43 | N | A | 0.0000 | |
| 44 | N | A | -0.7494 | |
| 45 | F | A | 0.0000 | |
| 46 | A | A | -0.8733 | |
| 47 | S | A | -1.4009 | |
| 48 | E | A | -1.8758 | |
| 49 | Q | A | -1.9141 | |
| 50 | E | A | -1.9846 | |
| 51 | C | A | 0.0000 | |
| 52 | M | A | -1.2192 | |
| 53 | S | A | -1.3764 | |
| 54 | S | A | -1.0021 | |
| 55 | C | A | 0.0000 | |
| 56 | Q | A | -1.3355 | |
| 57 | G | A | -0.9325 | |
| 58 | S | A | -0.4478 |