| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVREMNMYWYRQAPGKEREWVAAIASNGQYTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGSFFWGYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:37)
[INFO] Main: Simulation completed successfully. (00:01:38)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3504 | |
| 2 | V | A | -0.5987 | |
| 3 | Q | A | -1.1212 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3071 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7494 | |
| 8 | G | A | -1.0497 | |
| 9 | G | A | -0.8243 | |
| 10 | G | A | -0.0356 | |
| 11 | L | A | 1.0197 | |
| 12 | V | A | -0.0122 | |
| 13 | Q | A | -1.2664 | |
| 14 | A | A | -1.4995 | |
| 15 | G | A | -1.3993 | |
| 16 | G | A | -0.9236 | |
| 17 | S | A | -1.2416 | |
| 18 | L | A | -0.9223 | |
| 19 | R | A | -2.1454 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4988 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3790 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7599 | |
| 26 | G | A | -0.9284 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -1.6487 | |
| 29 | V | A | 0.0000 | |
| 30 | R | A | -3.4032 | |
| 31 | E | A | -2.3015 | |
| 32 | M | A | 0.0000 | |
| 33 | N | A | -1.1807 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | -0.0571 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4422 | |
| 38 | R | A | -1.3672 | |
| 39 | Q | A | -2.2638 | |
| 40 | A | A | -2.1371 | |
| 41 | P | A | -1.4778 | |
| 42 | G | A | -1.9995 | |
| 43 | K | A | -3.4718 | |
| 44 | E | A | -3.7585 | |
| 45 | R | A | -3.1472 | |
| 46 | E | A | -2.1248 | |
| 47 | W | A | -0.6844 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | A | A | -1.0856 | |
| 53 | S | A | -2.1566 | |
| 54 | N | A | -2.3947 | |
| 55 | G | A | -1.8057 | |
| 56 | Q | A | -1.0540 | |
| 57 | Y | A | 0.1435 | |
| 58 | T | A | -0.1932 | |
| 59 | H | A | -1.0404 | |
| 60 | Y | A | -1.3372 | |
| 61 | A | A | -1.5704 | |
| 62 | D | A | -2.5422 | |
| 63 | S | A | -1.7436 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7717 | |
| 66 | G | A | -1.7965 | |
| 67 | R | A | -1.5353 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9904 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6929 | |
| 72 | R | A | -1.6373 | |
| 73 | D | A | -2.2547 | |
| 74 | N | A | -3.1411 | |
| 75 | A | A | -1.9534 | |
| 76 | K | A | -2.4552 | |
| 77 | N | A | -2.1645 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6804 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2511 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4746 | |
| 85 | S | A | -1.2912 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5401 | |
| 88 | P | A | -2.0058 | |
| 89 | E | A | -2.4114 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0110 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.6704 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2784 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.2286 | |
| 100 | D | A | -0.1676 | |
| 101 | Y | A | 1.1128 | |
| 102 | G | A | 0.5717 | |
| 103 | S | A | 1.0316 | |
| 104 | F | A | 2.1822 | |
| 105 | F | A | 1.9510 | |
| 106 | W | A | 1.9043 | |
| 107 | G | A | 0.6894 | |
| 108 | Y | A | 0.7707 | |
| 109 | D | A | -1.1196 | |
| 110 | Y | A | -0.4757 | |
| 111 | W | A | -0.1020 | |
| 112 | G | A | -0.2997 | |
| 113 | Q | A | -1.1004 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.1816 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3320 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7810 |