| Chain sequence(s) |
A: VLGAFSDGLAHLDNLKGTFATLSELYGRKKRRQRRR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:22)
[INFO] Main: Simulation completed successfully. (00:01:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | 2.6921 | |
| 2 | L | A | 2.5642 | |
| 3 | G | A | 1.0709 | |
| 4 | A | A | 1.3157 | |
| 5 | F | A | 2.2735 | |
| 6 | S | A | 0.7079 | |
| 7 | D | A | -0.9556 | |
| 8 | G | A | -0.2017 | |
| 9 | L | A | 0.4441 | |
| 10 | A | A | -0.9507 | |
| 11 | H | A | -1.3978 | |
| 12 | L | A | -0.5878 | |
| 13 | D | A | -2.1903 | |
| 14 | N | A | -1.8424 | |
| 15 | L | A | -0.3034 | |
| 16 | K | A | -1.4704 | |
| 17 | G | A | -0.9892 | |
| 18 | T | A | 0.0364 | |
| 19 | F | A | 1.0934 | |
| 20 | A | A | 0.2701 | |
| 21 | T | A | 0.2565 | |
| 22 | L | A | 0.7015 | |
| 23 | S | A | -0.1354 | |
| 24 | E | A | -1.6571 | |
| 25 | L | A | -0.8349 | |
| 26 | Y | A | -0.9011 | |
| 27 | G | A | -2.5466 | |
| 28 | R | A | -4.1316 | |
| 29 | K | A | -4.7678 | |
| 30 | K | A | -5.4006 | |
| 31 | R | A | -5.7265 | |
| 32 | R | A | -5.8822 | |
| 33 | Q | A | -5.7831 | |
| 34 | R | A | -5.7536 | |
| 35 | R | A | -5.3240 | |
| 36 | R | A | -4.5040 |