Project name: 22.C6C4

Status: done

Started: 2026-07-07 08:39:58
Settings
Chain sequence(s) H: QVQLQQPGAELVKPGASVKLSCKASGYTFTTFWMHWVKQRPGRGLEWIGRIAPNSGDTKYNEKFKSKATLTADKSSSTAYMQLSSLTSEDSAVYYCARPDYWGQGTTLTVSS
L: DIQMTQSPSSLSASLGERVSLTCRASQKINGFLSWLQQKPDGTIKRLINAAAILDSGVPKRFSGSRSGSDYSLTISSLKSEDFADYYCLQYASYPWTFGGGTTLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:43)
Show buried residues

Minimal score value
-3.4405
Maximal score value
1.939
Average score
-0.6602
Total score value
-144.5932

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5200
2 V H -0.9038
3 Q H -1.7610
4 L H 0.0000
5 Q H -2.0995
6 Q H 0.0000
7 P H -0.9881
8 G H -0.9277
9 A H -0.2617
11 E H -0.3852
12 L H 0.8109
13 V H -0.2568
14 K H -1.6340
15 P H -1.3066
16 G H -1.0869
17 A H -0.8527
18 S H -1.0738
19 V H 0.0000
20 K H -2.0351
21 L H 0.0000
22 S H -0.9242
23 C H 0.0000
24 K H -1.8027
25 A H 0.0000
26 S H -1.2727
27 G H -1.0460
28 Y H -0.3273
29 T H -0.2535
30 F H 0.0000
35 T H -0.8198
36 T H 0.1079
37 F H 0.8432
38 W H 0.4756
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -1.0614
45 R H -1.6394
46 P H -1.2272
47 G H -1.6260
48 R H -2.5603
49 G H -1.6167
50 L H 0.0000
51 E H -1.3008
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H -0.4607
56 I H 0.0000
57 A H 0.0000
58 P H 0.0000
59 N H -1.8171
62 S H -1.3970
63 G H -1.5099
64 D H -1.2603
65 T H -0.8908
66 K H -1.5651
67 Y H -1.6658
68 N H -2.3753
69 E H -3.4405
70 K H -3.2299
71 F H 0.0000
72 K H -3.1261
74 S H -1.7687
75 K H -1.4970
76 A H 0.0000
77 T H -0.8025
78 L H 0.0000
79 T H -0.6931
80 A H -1.1174
81 D H -1.8166
82 K H -2.4677
83 S H -1.2820
84 S H -1.0754
85 S H -1.2416
86 T H 0.0000
87 A H 0.0000
88 Y H -0.5840
89 M H 0.0000
90 Q H -1.3374
91 L H 0.0000
92 S H -0.8186
93 S H -0.7789
94 L H 0.0000
95 T H -1.2746
96 S H -1.4496
97 E H -2.0136
98 D H 0.0000
99 S H -0.6905
100 A H 0.0000
101 V H -0.0787
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 P H 0.2274
116 D H -0.2036
117 Y H 0.2086
118 W H -0.3005
119 G H 0.0000
120 Q H -1.3472
121 G H 0.0000
122 T H 0.0000
123 T H -0.1825
124 L H 0.0000
125 T H -0.1632
126 V H 0.0000
127 S H -0.6396
128 S H -0.7737
1 D L -2.1357
2 I L 0.0000
3 Q L -2.2138
4 M L 0.0000
5 T L -1.3401
6 Q L -1.0919
7 S L -0.7404
8 P L -0.3944
9 S L -0.4896
10 S L -0.3762
11 L L -0.0295
12 S L -0.2791
13 A L 0.0000
14 S L -0.4787
15 L L 0.0636
16 G L -1.0191
17 E L -1.8646
18 R L -2.2702
19 V L 0.0000
20 S L -0.6168
21 L L 0.0000
22 T L -0.9132
23 C L 0.0000
24 R L -2.8846
25 A L 0.0000
26 S L -2.1267
27 Q L -2.6106
28 K L -2.7569
29 I L 0.0000
36 N L -1.8385
37 G L -0.6322
38 F L 0.7239
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 L L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.4971
46 P L -1.3754
47 D L -2.2016
48 G L -1.4513
49 T L -1.1431
50 I L 0.0000
51 K L -0.9796
52 R L -0.7064
53 L L 0.0000
54 I L 0.0000
55 N L 0.6766
56 A L 0.6686
57 A L 0.0000
65 A L 0.7311
66 I L 1.9390
67 L L 0.5316
68 D L -0.3775
69 S L -0.5279
70 G L -0.8771
71 V L 0.0000
72 P L -1.2270
74 K L -2.0275
75 R L -1.6197
76 F L 0.0000
77 S L -0.3109
78 G L -0.1134
79 S L -0.8713
80 R L -2.3016
83 S L -1.5518
84 G L -1.6936
85 S L -2.1848
86 D L -2.0779
87 Y L 0.0000
88 S L -0.9892
89 L L 0.0000
90 T L -0.6504
91 I L 0.0000
92 S L -1.5663
93 S L -1.3860
94 L L 0.0000
95 K L -1.4283
96 S L -1.0052
97 E L -1.9376
98 D L 0.0000
99 F L -0.3101
100 A L -0.6436
101 D L -0.5684
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 Y L 0.6990
108 A L 0.0749
109 S L -0.0014
114 Y L 0.1598
115 P L -0.7770
116 W L 0.0000
117 T L -0.5940
118 F L -0.3186
119 G L 0.0000
120 G L -1.0497
121 G L 0.0000
122 T L 0.0000
123 T L -0.4343
124 L L 0.0000
125 E L -0.0837
126 I L 0.9450
127 K L -0.8092
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Laboratory of Theory of Biopolymers 2018