| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYIFITYWMTWVRQAPGQGLEWMGQIFPASGSADYNEKFEGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARGGGGFAYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRTSENIYSYLAWYQQKPGKAPKLLIYNAKTLAEGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQHHYGIPFTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:05)
[INFO] Main: Simulation completed successfully. (00:02:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5622 | |
| 2 | V | H | -0.8749 | |
| 3 | Q | H | -1.3592 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.6969 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.3792 | |
| 8 | G | H | -0.3928 | |
| 9 | A | H | 0.2913 | |
| 11 | E | H | 0.1174 | |
| 12 | V | H | 1.0295 | |
| 13 | K | H | -0.9433 | |
| 14 | K | H | -2.2057 | |
| 15 | P | H | -2.3452 | |
| 16 | G | H | -1.7601 | |
| 17 | A | H | -1.4089 | |
| 18 | S | H | -1.4917 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.7879 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.4170 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.8198 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.5965 | |
| 27 | G | H | -0.7089 | |
| 28 | Y | H | 0.7382 | |
| 29 | I | H | 2.3479 | |
| 30 | F | H | 0.0000 | |
| 35 | I | H | 1.6856 | |
| 36 | T | H | 1.4387 | |
| 37 | Y | H | 1.5050 | |
| 38 | W | H | 0.9755 | |
| 39 | M | H | 0.0000 | |
| 40 | T | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4626 | |
| 45 | A | H | -0.8494 | |
| 46 | P | H | -0.9428 | |
| 47 | G | H | -1.2436 | |
| 48 | Q | H | -1.8442 | |
| 49 | G | H | -1.3536 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.6967 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Q | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | F | H | 0.7814 | |
| 58 | P | H | 0.0000 | |
| 59 | A | H | 0.6215 | |
| 62 | S | H | -0.1729 | |
| 63 | G | H | -0.4468 | |
| 64 | S | H | -0.2651 | |
| 65 | A | H | -0.0972 | |
| 66 | D | H | -0.3362 | |
| 67 | Y | H | -1.0258 | |
| 68 | N | H | -1.9129 | |
| 69 | E | H | -3.3990 | |
| 70 | K | H | -3.1781 | |
| 71 | F | H | 0.0000 | |
| 72 | E | H | -3.2372 | |
| 74 | G | H | -2.0306 | |
| 75 | R | H | -1.6313 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.7858 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.1293 | |
| 80 | T | H | -0.2759 | |
| 81 | D | H | -0.5787 | |
| 82 | T | H | -0.2824 | |
| 83 | S | H | -0.4046 | |
| 84 | T | H | -0.5341 | |
| 85 | S | H | -0.2178 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.4298 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1215 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.5478 | |
| 93 | S | H | -1.5187 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.1422 | |
| 96 | S | H | -2.3340 | |
| 97 | D | H | -2.4039 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6870 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.5568 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | G | H | -0.0502 | |
| 109 | G | H | -0.1575 | |
| 114 | G | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | A | H | -0.3250 | |
| 117 | Y | H | -0.1765 | |
| 118 | W | H | -0.2991 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2024 | |
| 121 | G | H | -0.4325 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.9312 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1077 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.2401 | |
| 128 | S | H | -0.8611 | |
| 1 | D | L | -2.1090 | |
| 2 | I | L | -1.3480 | |
| 3 | Q | L | -2.2076 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.4801 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.8942 | |
| 8 | P | L | -0.5488 | |
| 9 | S | L | -0.9156 | |
| 10 | S | L | -1.1716 | |
| 11 | L | L | -0.7954 | |
| 12 | S | L | -0.9830 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.1956 | |
| 15 | V | L | 0.7171 | |
| 16 | G | L | -0.4270 | |
| 17 | D | L | -1.4164 | |
| 18 | R | L | -2.0723 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5875 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.8025 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.7411 | |
| 25 | T | L | 0.0000 | |
| 26 | S | L | -1.9105 | |
| 27 | E | L | -1.8761 | |
| 28 | N | L | -1.0340 | |
| 29 | I | L | 0.0000 | |
| 36 | Y | L | 0.8451 | |
| 37 | S | L | 0.2642 | |
| 38 | Y | L | 0.6461 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.8056 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6888 | |
| 46 | P | L | -1.2936 | |
| 47 | G | L | -1.6396 | |
| 48 | K | L | -2.5105 | |
| 49 | A | L | -1.4855 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.0288 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1417 | |
| 56 | N | L | -0.2974 | |
| 57 | A | L | 0.0000 | |
| 65 | K | L | -1.1866 | |
| 66 | T | L | -0.6330 | |
| 67 | L | L | -0.2457 | |
| 68 | A | L | -0.8901 | |
| 69 | E | L | -1.8726 | |
| 70 | G | L | -1.2107 | |
| 71 | V | L | -0.6559 | |
| 72 | P | L | -0.4831 | |
| 74 | S | L | -0.3606 | |
| 75 | R | L | -0.7370 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.5136 | |
| 78 | G | L | -0.7026 | |
| 79 | S | L | -0.9561 | |
| 80 | G | L | -0.9532 | |
| 83 | S | L | -0.6278 | |
| 84 | G | L | -0.6835 | |
| 85 | T | L | -1.5177 | |
| 86 | D | L | -1.8758 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.8224 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5901 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.1960 | |
| 93 | S | L | -0.9874 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.5291 | |
| 96 | P | L | -0.6155 | |
| 97 | E | L | -1.8853 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.6798 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.1575 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | H | L | 0.0000 | |
| 107 | H | L | 0.3956 | |
| 108 | Y | L | 0.9079 | |
| 109 | G | L | 0.6861 | |
| 114 | I | L | 1.0145 | |
| 115 | P | L | 0.0000 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | -0.4696 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.7871 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7785 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.5394 | |
| 126 | I | L | 0.4136 | |
| 127 | K | L | -0.9909 |