Project name: 21d31691186e1d

Status: done

Started: 2026-02-11 11:36:06
Settings
Chain sequence(s) A: GGKGHFF
C: GGKGHFF
B: GGKGHFF
E: GGKGHFF
D: GGKGHFF
G: GGKGHFF
F: GGKGHFF
I: GGKGHFF
H: GGKGHFF
K: GGKGHFF
J: GGKGHFF
M: GGKGHFF
L: GGKGHFF
O: GGKGHFF
N: GGKGHFF
Q: GGKGHFF
P: GGKGHFF
S: GGKGHFF
R: GGKGHFF
T: GGKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:53)
Show buried residues

Minimal score value
-2.4258
Maximal score value
2.827
Average score
-0.0969
Total score value
-13.56

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.2623
2 G A -0.8391
3 K A -0.2999
4 G A 0.0000
5 H A 0.0000
6 F A 1.4952
7 F A 0.8385
1 G B -0.0166
2 G B 0.3237
3 K B 0.4754
4 G B 0.0000
5 H B 0.0000
6 F B 0.3572
7 F B -0.2612
1 G C -0.3412
2 G C -0.0755
3 K C 0.4874
4 G C 0.0000
5 H C 0.0000
6 F C 1.1414
7 F C 0.1562
1 G D -0.9260
2 G D -0.8987
3 K D -0.6725
4 G D 0.1490
5 H D 0.9015
6 F D 1.9028
7 F D 2.2428
1 G E -1.1772
2 G E -1.7679
3 K E -2.4258
4 G E -1.0119
5 H E 0.7761
6 F E 2.7784
7 F E 2.8270
1 G F -1.0524
2 G F -0.8723
3 K F -0.6640
4 G F 0.2574
5 H F 0.8484
6 F F 2.2308
7 F F 2.1285
1 G G -0.2169
2 G G 0.3605
3 K G 0.7507
4 G G 0.0000
5 H G 0.0000
6 F G 1.4561
7 F G 0.2449
1 G H -0.4404
2 G H -0.8468
3 K H -1.8121
4 G H -0.9265
5 H H -0.6670
6 F H 1.1291
7 F H 1.7363
1 G I -0.7134
2 G I 0.2848
3 K I 0.6178
4 G I 0.0000
5 H I 0.0000
6 F I 0.0000
7 F I -0.8893
1 G J -0.7795
2 G J -0.4579
3 K J -0.5496
4 G J 0.0000
5 H J 0.0000
6 F J 0.0000
7 F J 0.0000
1 G K -1.1727
2 G K -1.4175
3 K K -2.1486
4 G K -1.7613
5 H K -1.1293
6 F K 0.3495
7 F K 1.6463
1 G L -0.3702
2 G L 0.3262
3 K L -0.0141
4 G L 0.0000
5 H L -0.9174
6 F L 0.0000
7 F L -0.6505
1 G M -0.6584
2 G M -0.5366
3 K M -0.9899
4 G M 0.0000
5 H M -0.8106
6 F M 0.0000
7 F M 0.6733
1 G N -0.9421
2 G N -0.5037
3 K N -0.4817
4 G N 0.0000
5 H N 0.0000
6 F N 0.0000
7 F N 0.0000
1 G O -0.9267
2 G O -0.9968
3 K O -1.8850
4 G O 0.0000
5 H O -1.1824
6 F O 0.0000
7 F O 1.3477
1 G P -0.3741
2 G P -0.0263
3 K P -0.3649
4 G P 0.0000
5 H P -0.9937
6 F P 0.0000
7 F P -0.5641
1 G Q -0.7059
2 G Q 0.2708
3 K Q 0.2352
4 G Q 0.0000
5 H Q -0.0372
6 F Q -0.0313
7 F Q 0.4106
1 G R -0.9535
2 G R -1.3348
3 K R -2.0764
4 G R -1.1476
5 H R -0.1419
6 F R 2.1743
7 F R 2.4368
1 G S -0.0231
2 G S 0.4157
3 K S 0.2438
4 G S 0.0000
5 H S 0.0000
6 F S 0.0749
7 F S -0.1378
1 G T -0.8431
2 G T -0.5153
3 K T -0.4326
4 G T 0.0000
5 H T 0.0000
6 F T 0.0000
7 F T 0.0000
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Laboratory of Theory of Biopolymers 2018