| Chain sequence(s) |
A: GGKGHFF
C: GGKGHFF B: GGKGHFF E: GGKGHFF D: GGKGHFF G: GGKGHFF F: GGKGHFF I: GGKGHFF H: GGKGHFF K: GGKGHFF J: GGKGHFF M: GGKGHFF L: GGKGHFF O: GGKGHFF N: GGKGHFF Q: GGKGHFF P: GGKGHFF S: GGKGHFF R: GGKGHFF T: GGKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:03)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:44)
[INFO] Main: Simulation completed successfully. (00:05:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2623 | |
| 2 | G | A | -0.8391 | |
| 3 | K | A | -0.2999 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 0.0000 | |
| 6 | F | A | 1.4952 | |
| 7 | F | A | 0.8385 | |
| 1 | G | B | -0.0166 | |
| 2 | G | B | 0.3237 | |
| 3 | K | B | 0.4754 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 0.0000 | |
| 6 | F | B | 0.3572 | |
| 7 | F | B | -0.2612 | |
| 1 | G | C | -0.3412 | |
| 2 | G | C | -0.0755 | |
| 3 | K | C | 0.4874 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.0000 | |
| 6 | F | C | 1.1414 | |
| 7 | F | C | 0.1562 | |
| 1 | G | D | -0.9260 | |
| 2 | G | D | -0.8987 | |
| 3 | K | D | -0.6725 | |
| 4 | G | D | 0.1490 | |
| 5 | H | D | 0.9015 | |
| 6 | F | D | 1.9028 | |
| 7 | F | D | 2.2428 | |
| 1 | G | E | -1.1772 | |
| 2 | G | E | -1.7679 | |
| 3 | K | E | -2.4258 | |
| 4 | G | E | -1.0119 | |
| 5 | H | E | 0.7761 | |
| 6 | F | E | 2.7784 | |
| 7 | F | E | 2.8270 | |
| 1 | G | F | -1.0524 | |
| 2 | G | F | -0.8723 | |
| 3 | K | F | -0.6640 | |
| 4 | G | F | 0.2574 | |
| 5 | H | F | 0.8484 | |
| 6 | F | F | 2.2308 | |
| 7 | F | F | 2.1285 | |
| 1 | G | G | -0.2169 | |
| 2 | G | G | 0.3605 | |
| 3 | K | G | 0.7507 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 0.0000 | |
| 6 | F | G | 1.4561 | |
| 7 | F | G | 0.2449 | |
| 1 | G | H | -0.4404 | |
| 2 | G | H | -0.8468 | |
| 3 | K | H | -1.8121 | |
| 4 | G | H | -0.9265 | |
| 5 | H | H | -0.6670 | |
| 6 | F | H | 1.1291 | |
| 7 | F | H | 1.7363 | |
| 1 | G | I | -0.7134 | |
| 2 | G | I | 0.2848 | |
| 3 | K | I | 0.6178 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | 0.0000 | |
| 6 | F | I | 0.0000 | |
| 7 | F | I | -0.8893 | |
| 1 | G | J | -0.7795 | |
| 2 | G | J | -0.4579 | |
| 3 | K | J | -0.5496 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | 0.0000 | |
| 6 | F | J | 0.0000 | |
| 7 | F | J | 0.0000 | |
| 1 | G | K | -1.1727 | |
| 2 | G | K | -1.4175 | |
| 3 | K | K | -2.1486 | |
| 4 | G | K | -1.7613 | |
| 5 | H | K | -1.1293 | |
| 6 | F | K | 0.3495 | |
| 7 | F | K | 1.6463 | |
| 1 | G | L | -0.3702 | |
| 2 | G | L | 0.3262 | |
| 3 | K | L | -0.0141 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -0.9174 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | -0.6505 | |
| 1 | G | M | -0.6584 | |
| 2 | G | M | -0.5366 | |
| 3 | K | M | -0.9899 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | -0.8106 | |
| 6 | F | M | 0.0000 | |
| 7 | F | M | 0.6733 | |
| 1 | G | N | -0.9421 | |
| 2 | G | N | -0.5037 | |
| 3 | K | N | -0.4817 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | 0.0000 | |
| 6 | F | N | 0.0000 | |
| 7 | F | N | 0.0000 | |
| 1 | G | O | -0.9267 | |
| 2 | G | O | -0.9968 | |
| 3 | K | O | -1.8850 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | -1.1824 | |
| 6 | F | O | 0.0000 | |
| 7 | F | O | 1.3477 | |
| 1 | G | P | -0.3741 | |
| 2 | G | P | -0.0263 | |
| 3 | K | P | -0.3649 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -0.9937 | |
| 6 | F | P | 0.0000 | |
| 7 | F | P | -0.5641 | |
| 1 | G | Q | -0.7059 | |
| 2 | G | Q | 0.2708 | |
| 3 | K | Q | 0.2352 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -0.0372 | |
| 6 | F | Q | -0.0313 | |
| 7 | F | Q | 0.4106 | |
| 1 | G | R | -0.9535 | |
| 2 | G | R | -1.3348 | |
| 3 | K | R | -2.0764 | |
| 4 | G | R | -1.1476 | |
| 5 | H | R | -0.1419 | |
| 6 | F | R | 2.1743 | |
| 7 | F | R | 2.4368 | |
| 1 | G | S | -0.0231 | |
| 2 | G | S | 0.4157 | |
| 3 | K | S | 0.2438 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | 0.0000 | |
| 6 | F | S | 0.0749 | |
| 7 | F | S | -0.1378 | |
| 1 | G | T | -0.8431 | |
| 2 | G | T | -0.5153 | |
| 3 | K | T | -0.4326 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | 0.0000 | |
| 6 | F | T | 0.0000 | |
| 7 | F | T | 0.0000 |