| Chain sequence(s) |
A: GKPTCGETCFKGKCYTPGCTCSYPLCKKD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:56)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.4710 | |
| 2 | K | A | -2.8846 | |
| 3 | P | A | -1.9952 | |
| 4 | T | A | -1.6508 | |
| 5 | C | A | -1.0817 | |
| 6 | G | A | -1.0522 | |
| 7 | E | A | -0.4019 | |
| 8 | T | A | 0.1331 | |
| 9 | C | A | 0.0000 | |
| 10 | F | A | 1.0347 | |
| 11 | K | A | -1.1263 | |
| 12 | G | A | -0.8230 | |
| 13 | K | A | -1.3023 | |
| 14 | C | A | -0.1325 | |
| 15 | Y | A | 0.8105 | |
| 16 | T | A | -0.0285 | |
| 17 | P | A | -0.2234 | |
| 18 | G | A | -1.0161 | |
| 19 | C | A | -1.1973 | |
| 20 | T | A | -0.6930 | |
| 21 | C | A | 0.2975 | |
| 22 | S | A | 0.6362 | |
| 23 | Y | A | 1.4115 | |
| 24 | P | A | 0.9982 | |
| 25 | L | A | 0.5920 | |
| 26 | C | A | 0.0000 | |
| 27 | K | A | -1.9431 | |
| 28 | K | A | -2.8301 | |
| 29 | D | A | -3.0700 |