Project name: query_structure

Status: done

Started: 2026-03-16 23:25:16
Settings
Chain sequence(s) A: GKPTCGETCFKGKCYTPGCTCSYPLCKKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.07
Maximal score value
1.4115
Average score
-0.69
Total score value
-20.0093

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.4710
2 K A -2.8846
3 P A -1.9952
4 T A -1.6508
5 C A -1.0817
6 G A -1.0522
7 E A -0.4019
8 T A 0.1331
9 C A 0.0000
10 F A 1.0347
11 K A -1.1263
12 G A -0.8230
13 K A -1.3023
14 C A -0.1325
15 Y A 0.8105
16 T A -0.0285
17 P A -0.2234
18 G A -1.0161
19 C A -1.1973
20 T A -0.6930
21 C A 0.2975
22 S A 0.6362
23 Y A 1.4115
24 P A 0.9982
25 L A 0.5920
26 C A 0.0000
27 K A -1.9431
28 K A -2.8301
29 D A -3.0700
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Laboratory of Theory of Biopolymers 2018