Project name: G12D4

Status: done

Started: 2026-01-07 04:16:04
Settings
Chain sequence(s) E: NAGVEQSPKHVTLPEGASMTLQCTQDMNHNYMYWYRQDPGKGLKLIYYSVGAGITDKGEVPNGYNVSRSTTEDFPLRLESVAPSQTSVYFCASSGQGETGELFFGEGSRLTVT
D: AQSVEQSPSHVSVPEGASVTLRCNYSSSVPPYLFWYVQDPGQGLQLLLKYTTGATLVKGINGFEAEFDKSEKSFHLTKPSVHPSDAAEYFCAVKGTALIFGQGTTLTVT
input PDB
Selected Chain(s) E,D
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-3.2349
Maximal score value
1.5181
Average score
-0.8603
Total score value
-190.9807

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A D 0.0292
2 Q D -0.0574
3 S D -0.6995
4 V D 0.0000
5 E D -2.7373
6 Q D -2.1933
7 S D -1.7791
8 P D -1.2959
9 S D -1.4290
10 H D -1.1061
11 V D -0.3175
12 S D -0.4098
13 V D -0.6032
14 P D -1.3816
15 E D -2.5408
16 G D -1.7634
17 A D -1.1196
18 S D -0.8353
19 V D 0.0000
20 T D -0.6966
21 L D 0.0000
22 R D -2.5102
23 C D 0.0000
24 N D -2.5094
25 Y D 0.0000
26 S D -0.6914
27 S D 0.0804
28 S D 0.5242
29 V D 1.5181
30 P D 0.3349
31 P D 0.0000
32 Y D -0.0455
33 L D 0.0000
34 F D 0.0000
35 W D 0.0000
36 Y D 0.0000
37 V D 0.0000
38 Q D 0.0000
39 D D -1.6959
40 P D -1.2789
41 G D -1.7946
42 Q D -2.5131
43 G D -1.7443
44 L D 0.0000
45 Q D -1.0033
46 L D -0.0905
47 L D 0.0000
48 L D 0.0000
49 K D -0.5841
50 Y D -0.3161
51 T D -0.3442
52 T D -0.3072
53 G D -0.2918
54 A D -0.1777
55 T D -0.5848
56 L D -0.0687
57 V D -0.7541
58 K D -1.8970
59 G D -0.9343
60 I D -0.4485
61 N D -1.4932
62 G D -1.3366
63 F D 0.0000
64 E D -1.5130
65 A D 0.0000
66 E D -1.9830
67 F D 0.0000
68 D D -2.8146
69 K D -3.2349
70 S D -2.4090
71 E D -3.1917
72 K D -2.9674
73 S D 0.0000
74 F D 0.0000
75 H D -1.8893
76 L D 0.0000
77 T D -1.1277
78 K D 0.0000
79 P D -0.6296
80 S D -1.1936
81 V D 0.0000
82 H D -2.0302
83 P D -1.2847
84 S D -1.0497
85 D D 0.0000
86 A D -0.4582
87 A D 0.0000
88 E D -0.8859
89 Y D 0.0000
90 F D 0.0000
91 C D 0.0000
92 A D 0.0000
93 V D 0.0000
94 K D -0.4489
95 G D -0.1964
96 T D -0.2964
97 A D 0.0000
98 L D 0.0000
99 I D -0.1445
100 F D 0.0000
101 G D 0.0000
102 Q D -2.3802
103 G D 0.0000
104 T D 0.0000
105 T D -0.7490
106 L D 0.0000
107 T D -0.5105
108 V D -0.7394
109 T D -0.7700
1 N E -1.4938
2 A E -1.3563
3 G E -1.3536
4 V E 0.0000
5 E E -2.9308
6 Q E -2.1540
7 S E -1.9939
8 P E -1.8466
9 K E -3.1767
10 H E -2.2483
11 V E -0.9695
12 T E -0.5503
13 L E -0.4664
14 P E -1.2791
15 E E -2.2887
16 G E -1.8385
17 A E -1.3074
18 S E -1.6028
19 M E -0.9992
20 T E -1.3625
21 L E 0.0000
22 Q E -1.8078
23 C E 0.0000
24 T E -1.8741
25 Q E 0.0000
26 D E -2.8306
27 M E -1.8466
28 N E -2.3327
29 H E -1.7832
30 N E -1.4966
31 Y E -0.3649
32 M E 0.0000
33 Y E 0.0000
34 W E 0.0000
35 Y E 0.0000
36 R E -0.9336
37 Q E 0.0000
38 D E -1.4057
39 P E -1.1860
40 G E -1.7576
41 K E -2.7270
42 G E -1.9058
43 L E 0.0000
44 K E -1.9921
45 L E 0.0000
46 I E 0.0000
47 Y E 0.0000
48 Y E -0.3039
49 S E 0.0000
50 V E 0.4837
51 G E 0.0159
52 A E -0.0720
53 G E 0.4383
54 I E 1.4134
55 T E -0.1710
56 D E -1.6934
57 K E -2.9887
58 G E -2.3430
59 E E -2.4413
60 V E -1.4973
61 P E -2.0050
62 N E -1.9935
63 G E -1.8998
64 Y E 0.0000
65 N E -2.3638
66 V E -1.0231
67 S E -0.5869
68 R E 0.0000
69 S E -0.3901
70 T E -1.0290
71 T E -1.5792
72 E E -2.2620
73 D E -1.8532
74 F E 0.0000
75 P E -1.1885
76 L E 0.0000
77 R E -2.7763
78 L E 0.0000
79 E E -2.7726
80 S E -2.0319
81 V E 0.0000
82 A E -1.2427
83 P E -0.8666
84 S E -0.6154
85 Q E 0.0000
86 T E -0.4831
87 S E 0.0000
88 V E -1.0789
89 Y E 0.0000
90 F E 0.0000
91 C E 0.0000
92 A E 0.0000
93 S E 0.0000
94 S E 0.0000
95 G E -1.4751
96 Q E -1.7975
97 G E -1.6476
98 E E -2.2474
99 T E -1.3249
100 G E 0.0000
101 E E -0.5572
102 L E 0.0000
103 F E 0.8389
104 F E -0.3966
105 G E 0.0000
106 E E -3.1174
107 G E 0.0000
108 S E 0.0000
109 R E -2.3455
110 L E 0.0000
111 T E -0.7180
112 V E 0.0000
113 T E -0.7370
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Laboratory of Theory of Biopolymers 2018