| Chain sequence(s) |
A: DVQLVESGGGLVQPGGSLKLSCAASGFAFDDYAIGWFRQAPGEERLGVSSISSTYGLAYYADSVKGRFTISSDNSKNTVYLQMNSLRPEDTAVYYCAATPIGLIGLDAYEYDYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08)
[INFO] Main: Simulation completed successfully. (00:01:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.7464 | |
| 2 | V | A | -0.3699 | |
| 3 | Q | A | -1.1554 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.7392 | |
| 6 | E | A | 0.1127 | |
| 7 | S | A | -0.2638 | |
| 8 | G | A | -0.3681 | |
| 9 | G | A | -0.2831 | |
| 10 | G | A | 0.0639 | |
| 11 | L | A | 1.5122 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.2199 | |
| 14 | P | A | -0.4191 | |
| 15 | G | A | -0.5243 | |
| 16 | G | A | -0.1722 | |
| 17 | S | A | -0.2404 | |
| 18 | L | A | -0.1049 | |
| 19 | K | A | -1.7112 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.0130 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | 0.0344 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.2971 | |
| 26 | G | A | -0.4267 | |
| 27 | F | A | 0.1903 | |
| 28 | A | A | 0.1060 | |
| 29 | F | A | 0.0000 | |
| 30 | D | A | -2.1147 | |
| 31 | D | A | -2.0809 | |
| 32 | Y | A | -0.1882 | |
| 33 | A | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -0.3022 | |
| 39 | Q | A | -0.4923 | |
| 40 | A | A | -0.1053 | |
| 41 | P | A | -0.3372 | |
| 42 | G | A | -0.8087 | |
| 43 | E | A | -2.0706 | |
| 44 | E | A | -2.2370 | |
| 45 | R | A | -0.9293 | |
| 46 | L | A | 0.3543 | |
| 47 | G | A | 0.0802 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | S | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | 0.0000 | |
| 53 | S | A | 0.0000 | |
| 54 | T | A | -0.0115 | |
| 55 | Y | A | 1.2202 | |
| 56 | G | A | -0.0588 | |
| 57 | L | A | 0.8629 | |
| 58 | A | A | 0.3273 | |
| 59 | Y | A | 0.8030 | |
| 60 | Y | A | 0.3946 | |
| 61 | A | A | -0.2666 | |
| 62 | D | A | -1.8260 | |
| 63 | S | A | -0.5343 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -1.7853 | |
| 66 | G | A | -0.8348 | |
| 67 | R | A | -0.4063 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.0381 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.1287 | |
| 72 | S | A | -0.1575 | |
| 73 | D | A | -0.5194 | |
| 74 | N | A | -0.7994 | |
| 75 | S | A | -0.6338 | |
| 76 | K | A | -1.8111 | |
| 77 | N | A | -0.7854 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.3222 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.6453 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -0.5246 | |
| 85 | S | A | -0.3342 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -1.7315 | |
| 88 | P | A | -0.8226 | |
| 89 | E | A | -1.8542 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.0201 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.7401 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.1400 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | T | A | 0.0000 | |
| 100 | P | A | 0.1407 | |
| 101 | I | A | 1.4637 | |
| 102 | G | A | 0.0967 | |
| 103 | L | A | 1.5195 | |
| 104 | I | A | 0.5767 | |
| 105 | G | A | 0.0592 | |
| 106 | L | A | 0.1817 | |
| 107 | D | A | -1.0785 | |
| 108 | A | A | 0.0318 | |
| 109 | Y | A | 1.2241 | |
| 110 | E | A | -0.2838 | |
| 111 | Y | A | 0.0000 | |
| 112 | D | A | -1.7113 | |
| 113 | Y | A | 0.1570 | |
| 114 | W | A | 0.3582 | |
| 115 | G | A | -0.2277 | |
| 116 | Q | A | -1.2272 | |
| 117 | G | A | -0.2913 | |
| 118 | T | A | 0.2568 | |
| 119 | L | A | 1.6204 | |
| 120 | V | A | 0.0000 | |
| 121 | T | A | 0.1555 | |
| 122 | V | A | 0.0000 | |
| 123 | S | A | -0.1977 | |
| 124 | S | A | -0.2418 |