Project name: query_structure

Status: done

Started: 2026-03-16 22:51:36
Settings
Chain sequence(s) A: YPVRCLPSAHGSCADWAARWYFVASVGQCNRFWYGGCHGNANNFASEQECMSSCQGS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-2.2596
Maximal score value
1.871
Average score
-0.4487
Total score value
-25.5753

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Y A 1.7102
2 P A 1.0249
3 V A 1.8710
4 R A 0.4026
5 C A 0.0000
6 L A 0.8288
7 P A -0.1605
8 S A -0.5110
9 A A -0.6603
10 H A -0.7756
11 G A -0.8259
12 S A -0.5095
13 C A -0.1591
14 A A -0.2337
15 D A -0.9659
16 W A 0.4874
17 A A 0.2865
18 A A -0.1031
19 R A -0.8299
20 W A -1.3851
21 Y A -0.8526
22 F A -0.5656
23 V A 0.1643
24 A A 0.3497
25 S A 0.5786
26 V A 1.2075
27 G A -0.0666
28 Q A -0.9714
29 C A 0.0000
30 N A -2.1477
31 R A -2.2596
32 F A 0.0000
33 W A 0.5776
34 Y A -0.0734
35 G A 0.0000
36 G A -0.5293
37 C A -0.5414
38 H A -1.1763
39 G A -1.1252
40 N A -0.6488
41 A A -0.0309
42 N A 0.0000
43 N A -0.7053
44 F A -0.9301
45 A A -0.7464
46 S A -1.3686
47 E A -1.9944
48 Q A -1.8971
49 E A -1.9256
50 C A 0.0000
51 M A -1.3715
52 S A -1.3769
53 S A -1.1577
54 C A 0.0000
55 Q A -1.7182
56 G A -1.1352
57 S A -0.6290
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Laboratory of Theory of Biopolymers 2018