Project name: AAB-PP3117

Status: done

Started: 2026-03-31 14:35:28
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYGMHWVRQAPGKGLEWVSAISGSGGTAFYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGGSGYDYYFEPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:03)
Show buried residues

Minimal score value
-3.1597
Maximal score value
2.1017
Average score
-0.563
Total score value
-130.6195

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 Q H -1.2903
1 V H -0.6754
2 Q H -0.6677
3 L H 0.0000
4 V H 1.3706
5 E H 0.0000
6 S H -0.1316
7 G H -0.7756
8 G H 0.1425
9 G H 0.9196
10 V H 1.5501
11 V H 0.0000
12 Q H -1.7807
13 P H -2.0837
14 G H -2.0410
15 E H -2.1907
16 S H -1.5927
17 L H -0.9992
18 K H -1.9344
19 I H 0.0000
20 S H -0.3165
21 C H 0.0000
22 A H 0.0371
23 A H 0.0000
24 S H -0.5249
25 G H -0.8395
26 F H -0.2792
27 T H -0.1820
28 F H 0.0000
29 S H -0.8329
30 S H -0.1185
31 Y H 0.2164
32 G H 0.0407
33 M H 0.0000
34 H H 0.0000
35 W H 0.0000
36 V H 0.0000
37 R H 0.0000
38 Q H -0.7154
39 A H -1.0370
40 P H -0.9826
41 G H -1.5057
42 K H -2.3826
43 G H -1.6143
44 L H 0.0000
45 E H -1.2256
46 W H 0.0000
47 V H 0.0000
48 S H 0.0000
49 A H 0.0000
50 I H 0.0000
51 S H -0.2519
52 G H -0.5137
53 S H -0.7396
54 G H -0.8486
55 G H -0.7233
56 T H -0.1089
57 A H 0.5524
58 F H 1.1111
59 Y H -0.1019
60 A H -1.0693
61 D H -2.2846
62 S H -1.7073
63 V H 0.0000
64 K H -2.3542
65 G H -1.6912
66 R H -1.2426
67 F H 0.0000
68 T H -0.5974
69 I H 0.0000
70 S H -0.4539
71 R H -1.1003
72 D H -1.6524
73 N H -1.8134
74 S H -1.6326
75 K H -2.4384
76 N H -1.8664
77 T H -1.0079
78 L H 0.0000
79 Y H -0.4603
80 L H 0.0000
81 Q H -1.1102
82 M H 0.0000
83 N H -1.7046
84 S H -1.6411
85 L H 0.0000
86 R H -2.7623
87 A H -1.9114
88 E H -2.3340
89 D H 0.0000
90 T H -0.4100
91 A H 0.0000
92 V H 0.9063
93 Y H 0.0000
94 Y H 0.0000
95 C H 0.0000
96 A H 0.0000
97 R H -0.3497
98 S H 0.0000
99 T H 0.7483
100 Y H 1.9580
101 Y H 1.6384
102 Y H 1.3993
103 G H -0.0272
104 G H -0.5138
105 S H -0.3068
106 G H 0.1634
107 Y H 1.4083
108 D H 1.0168
109 Y H 1.3754
110 Y H 0.4182
111 F H 0.0000
112 E H -0.8689
113 P H -0.8172
114 W H 0.0000
115 G H 0.0000
116 P H -0.3729
117 G H 0.1717
118 T H 0.7474
119 L H 1.7367
120 V H 0.0000
121 T H 0.3754
122 V H 0.0000
123 S H -0.6583
124 S H -0.5983
125 D L -2.0060
126 I L 0.0000
127 Q L -2.1932
128 M L 0.0000
129 T L -1.2781
130 Q L 0.0000
131 S L -0.7293
132 P L -0.5979
133 S L -0.9602
134 S L -1.1329
135 L L -0.6520
136 S L -0.7040
137 A L 0.0000
138 S L -0.1442
139 V L 0.7271
140 G L -0.7042
141 D L -1.6663
142 R L -2.3415
143 V L 0.0000
144 T L -0.6344
145 I L 0.0000
146 T L -0.9694
147 C L 0.0000
148 R L -3.0419
149 A L 0.0000
150 S L -2.2562
151 Q L -2.8575
152 H L -2.5752
153 I L 0.0000
154 R L -2.5927
155 S L -1.4435
156 S L -0.3948
157 L L 0.0000
158 A L 0.0000
159 W L 0.0000
160 Y L 0.0000
161 Q L -0.9782
162 Q L 0.0000
163 K L -2.1608
164 P L -1.4668
165 G L -1.6540
166 K L -2.5401
167 A L -1.5697
168 P L 0.0000
169 K L -2.0025
170 L L 0.0000
171 L L 0.0000
172 I L 0.0000
173 Y L -0.2218
174 G L -0.7805
175 A L 0.0000
176 S L -0.7680
177 S L -0.8078
178 R L -1.6760
179 A L -0.9808
180 T L -0.6051
181 G L -0.9206
182 I L 0.0000
183 P L -1.3875
184 D L -2.3083
185 R L -1.6190
186 F L 0.0000
187 S L -1.0269
188 G L -0.5855
189 S L -0.8187
190 G L -1.4283
191 S L -1.8233
192 G L -2.4355
193 T L -2.6654
194 D L -3.1597
195 F L 0.0000
196 T L -0.9086
197 L L 0.0000
198 T L -0.6135
199 I L 0.0000
200 S L -1.6822
201 S L -1.2877
202 L L 0.0000
203 Q L -0.7758
204 P L -0.6469
205 E L -1.8861
206 D L 0.0000
207 F L -0.5651
208 A L 0.0000
209 T L -1.2430
210 Y L 0.0000
211 Y L 0.0000
212 C L 0.0000
213 Q L 0.0000
214 H L 0.0000
215 T L 1.2064
216 Y L 1.4683
217 I L 2.1017
218 T L 0.8664
219 P L 0.0604
220 Y L 0.0000
221 T L -0.4617
222 F L -0.4774
223 G L 0.0000
224 Q L -1.5777
225 G L 0.0000
226 T L 0.0000
227 K L -2.1419
228 V L 0.0000
229 E L -0.9096
230 I L 0.9407
231 K L -0.7847
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Laboratory of Theory of Biopolymers 2018