Project name: query_structure

Status: done

Started: 2026-03-16 21:44:00
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFNIAYWEPGIGGEAIWLRVPGSERSYDLTGLKPGTEYAVWIHGVKGGASSPPLIARFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-3.1127
Maximal score value
1.4351
Average score
-0.7044
Total score value
-63.3934

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0706
2 L A 0.4552
3 P A -0.1953
4 A A -0.4970
5 P A 0.0000
6 K A -2.0982
7 N A -1.3240
8 L A -0.0029
9 V A 0.9039
10 V A 0.0120
11 S A -0.6280
12 R A -2.0197
13 V A -1.0392
14 T A -1.8056
15 E A -3.0736
16 D A -2.7790
17 S A -2.1052
18 A A 0.0000
19 R A -1.2189
20 L A 0.0000
21 S A -0.4021
22 W A 0.0000
23 T A -1.3512
24 A A -1.4417
25 P A -1.4179
26 D A -2.2785
27 A A -1.4277
28 A A -1.1713
29 F A 0.0000
30 D A -2.5345
31 S A 0.0000
32 F A 0.0000
33 N A -0.6462
34 I A 0.0000
35 A A 0.0000
36 Y A 0.5772
37 W A -0.2334
38 E A -0.9822
39 P A -0.7329
40 G A -0.0583
41 I A 1.0374
42 G A -0.1638
43 G A -0.5390
44 E A -1.3284
45 A A -0.0859
46 I A 1.0963
47 W A 1.0923
48 L A 0.1135
49 R A -1.6219
50 V A 0.0000
51 P A -1.5530
52 G A 0.0000
53 S A -1.6275
54 E A -1.7223
55 R A -1.1648
56 S A -0.6519
57 Y A -0.7132
58 D A -1.6447
59 L A 0.0000
60 T A -1.3580
61 G A -1.5137
62 L A 0.0000
63 K A -3.1127
64 P A -2.6896
65 G A -2.0019
66 T A -2.0210
67 E A -2.5196
68 Y A 0.0000
69 A A 0.0000
70 V A 0.0000
71 W A 1.1559
72 I A 0.0000
73 H A -0.3199
74 G A 0.0000
75 V A -1.2913
76 K A -1.6929
77 G A -1.4048
78 G A -1.1438
79 A A -0.6172
80 S A -0.3765
81 S A 0.0000
82 P A 0.2415
83 P A 0.2330
84 L A 0.7624
85 I A 1.4351
86 A A 0.2559
87 R A -1.6010
88 F A 0.0000
89 T A -1.8264
90 T A -2.0644
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Laboratory of Theory of Biopolymers 2018