| Chain sequence(s) |
H: QVQLVQSGAEVVKPGASVKVSCKASGYAFSSSWMNWVRQAPGQGLEWIGRIYPGDGDTNYAQKFQGKATLTADKSTSTAYMELSSLRSEDTAVYFCAREYDEAYWGQGTLVTVSS
L: DIQMTQTPLSLSVTPGQPASISCKSSQSLLYSNGKTYLNWLLQKPGQSPKRLIYLVSKLDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4638 | |
| 2 | V | H | 0.0000 | |
| 3 | Q | H | -0.9186 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.5327 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.4020 | |
| 8 | G | H | -0.3522 | |
| 9 | A | H | 0.4541 | |
| 11 | E | H | 0.5273 | |
| 12 | V | H | 1.4719 | |
| 13 | V | H | -0.1557 | |
| 14 | K | H | -1.7672 | |
| 15 | P | H | -2.0513 | |
| 16 | G | H | -1.4503 | |
| 17 | A | H | -1.0493 | |
| 18 | S | H | -1.2061 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8504 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.4389 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.7134 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7541 | |
| 27 | G | H | -0.9718 | |
| 28 | Y | H | -0.3402 | |
| 29 | A | H | -0.2081 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.9604 | |
| 36 | S | H | -0.3100 | |
| 37 | S | H | 0.0000 | |
| 38 | W | H | -0.0213 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | -0.4108 | |
| 44 | Q | H | -0.6178 | |
| 45 | A | H | 0.0000 | |
| 46 | P | H | -0.7645 | |
| 47 | G | H | -1.2141 | |
| 48 | Q | H | -1.7591 | |
| 49 | G | H | -1.1229 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8583 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.6215 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | -0.7340 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -1.5299 | |
| 62 | D | H | -2.4142 | |
| 63 | G | H | -1.8476 | |
| 64 | D | H | -1.5835 | |
| 65 | T | H | -0.8781 | |
| 66 | N | H | -0.6192 | |
| 67 | Y | H | -0.9278 | |
| 68 | A | H | 0.0000 | |
| 69 | Q | H | -2.7041 | |
| 70 | K | H | -2.7278 | |
| 71 | F | H | 0.0000 | |
| 72 | Q | H | -2.4057 | |
| 74 | G | H | -1.6381 | |
| 75 | K | H | -1.5072 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8124 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.4574 | |
| 80 | A | H | -1.0138 | |
| 81 | D | H | -1.5367 | |
| 82 | K | H | -2.2434 | |
| 83 | S | H | -1.1890 | |
| 84 | T | H | -0.9814 | |
| 85 | S | H | -1.1541 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3898 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1266 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0519 | |
| 93 | S | H | -1.1809 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.8257 | |
| 96 | S | H | -2.2471 | |
| 97 | E | H | -2.5337 | |
| 98 | D | H | -1.6437 | |
| 99 | T | H | -0.7006 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.4144 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | E | H | -0.8395 | |
| 108 | Y | H | -0.9535 | |
| 114 | D | H | -2.1844 | |
| 115 | E | H | -1.9800 | |
| 116 | A | H | -1.2590 | |
| 117 | Y | H | -0.9065 | |
| 118 | W | H | -0.3476 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -0.9615 | |
| 121 | G | H | -0.2678 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.8775 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1296 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6780 | |
| 128 | S | H | -0.8357 | |
| 1 | D | L | -2.0136 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.1744 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.9348 | |
| 6 | Q | L | 0.0000 | |
| 7 | T | L | 0.0341 | |
| 8 | P | L | 0.3569 | |
| 9 | L | L | 1.1205 | |
| 10 | S | L | 0.0979 | |
| 11 | L | L | -0.0809 | |
| 12 | S | L | -0.6724 | |
| 13 | V | L | -0.9465 | |
| 14 | T | L | -1.3224 | |
| 15 | P | L | -1.4218 | |
| 16 | G | L | -1.6552 | |
| 17 | Q | L | -1.9446 | |
| 18 | P | L | -1.8180 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -0.6796 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.6620 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -2.2287 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -1.7816 | |
| 27 | Q | L | -1.9236 | |
| 28 | S | L | -0.6300 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | 0.9932 | |
| 31 | Y | L | 0.4848 | |
| 32 | S | L | -0.4167 | |
| 34 | N | L | -1.4014 | |
| 35 | G | L | -0.9971 | |
| 36 | K | L | -0.8062 | |
| 37 | T | L | 0.1195 | |
| 38 | Y | L | 0.3514 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | -0.0899 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | L | L | 0.0000 | |
| 44 | Q | L | -1.1577 | |
| 45 | K | L | -1.5404 | |
| 46 | P | L | -0.8908 | |
| 47 | G | L | -1.2398 | |
| 48 | Q | L | -1.7585 | |
| 49 | S | L | 0.0000 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.8364 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | -0.4870 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.4728 | |
| 56 | L | L | -0.2791 | |
| 57 | V | L | -0.2939 | |
| 65 | S | L | -0.7705 | |
| 66 | K | L | -1.3731 | |
| 67 | L | L | -0.6656 | |
| 68 | D | L | -1.1004 | |
| 69 | S | L | -0.8763 | |
| 70 | G | L | -0.6465 | |
| 71 | V | L | -0.5920 | |
| 72 | P | L | -0.9544 | |
| 74 | D | L | -2.0089 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.1114 | |
| 78 | G | L | -0.6821 | |
| 79 | S | L | -0.8116 | |
| 80 | G | L | -1.0358 | |
| 83 | S | L | -0.6556 | |
| 84 | G | L | -0.4817 | |
| 85 | T | L | -1.2850 | |
| 86 | D | L | -1.9117 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.9089 | |
| 89 | L | L | 0.0000 | |
| 90 | K | L | -1.4034 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.0593 | |
| 93 | R | L | -2.9795 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -2.0312 | |
| 96 | A | L | -1.3250 | |
| 97 | E | L | -1.9515 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.5643 | |
| 100 | G | L | 0.0000 | |
| 101 | V | L | -0.1574 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | V | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | -0.0510 | |
| 108 | T | L | 0.0000 | |
| 109 | H | L | 0.1414 | |
| 114 | F | L | 1.1013 | |
| 115 | P | L | 0.0000 | |
| 116 | Q | L | -0.3405 | |
| 117 | T | L | -0.7407 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.6796 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6563 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.7574 | |
| 126 | I | L | -0.5806 | |
| 127 | K | L | -1.4710 |