| Chain sequence(s) |
L: GYPGAAYQGYAKNF
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:06)
[INFO] Main: Simulation completed successfully. (00:00:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | G | L | 0.2329 | |
| 1 | Y | L | 1.1542 | |
| 2 | P | L | -0.0720 | |
| 3 | G | L | -0.4943 | |
| 4 | A | L | -0.0191 | |
| 5 | A | L | 0.3115 | |
| 6 | Y | L | 1.2021 | |
| 7 | Q | L | -0.5547 | |
| 8 | G | L | -0.2653 | |
| 9 | Y | L | 1.4078 | |
| 10 | A | L | 0.0538 | |
| 11 | K | L | -1.9317 | |
| 12 | N | L | -1.0952 | |
| 13 | F | L | 1.6622 |