| Chain sequence(s) |
A: VQLVESGGGVVKPGGSLRLSCAASGDLFRSYTMSWYRQAPGKERELVATIGSPIYTTTYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCNGRFTLGSWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:12)
[INFO] Main: Simulation completed successfully. (00:01:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | V | A | 0.8195 | |
| 3 | Q | A | -0.2834 | |
| 4 | L | A | 0.6400 | |
| 5 | V | A | 1.2458 | |
| 6 | E | A | -0.4030 | |
| 7 | S | A | -0.7753 | |
| 8 | G | A | -1.4247 | |
| 9 | G | A | -0.4448 | |
| 10 | G | A | 0.2032 | |
| 11 | V | A | 1.4949 | |
| 12 | V | A | 0.3120 | |
| 13 | K | A | -1.5410 | |
| 14 | P | A | -1.9089 | |
| 15 | G | A | -1.6185 | |
| 16 | G | A | -1.0394 | |
| 17 | S | A | -1.2792 | |
| 18 | L | A | -0.7979 | |
| 19 | R | A | -2.1533 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.6559 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.5167 | |
| 24 | A | A | -0.5091 | |
| 25 | S | A | -0.8407 | |
| 26 | G | A | -0.7317 | |
| 27 | D | A | -1.3067 | |
| 28 | L | A | 0.3243 | |
| 29 | F | A | 1.3207 | |
| 30 | R | A | -0.2819 | |
| 31 | S | A | 0.0000 | |
| 32 | Y | A | 1.1070 | |
| 33 | T | A | 0.3104 | |
| 34 | M | A | 0.0000 | |
| 35 | S | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.2715 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8793 | |
| 40 | A | A | 0.0000 | |
| 41 | P | A | -1.5006 | |
| 42 | G | A | -2.0558 | |
| 43 | K | A | -3.5590 | |
| 44 | E | A | -3.9852 | |
| 45 | R | A | -3.3254 | |
| 46 | E | A | -2.2570 | |
| 47 | L | A | -0.2960 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.1587 | |
| 51 | I | A | 0.0000 | |
| 52 | G | A | 0.5569 | |
| 53 | S | A | 0.4136 | |
| 54 | P | A | 0.3780 | |
| 55 | I | A | 1.0129 | |
| 56 | Y | A | 1.5857 | |
| 57 | T | A | 0.7105 | |
| 58 | T | A | 0.4139 | |
| 59 | T | A | -0.3005 | |
| 60 | Y | A | -0.6469 | |
| 61 | A | A | -1.1533 | |
| 62 | D | A | -2.5138 | |
| 63 | S | A | -1.8348 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.6596 | |
| 66 | G | A | -1.8095 | |
| 67 | R | A | -1.6623 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8607 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.1497 | |
| 72 | R | A | -1.0481 | |
| 73 | D | A | -1.7858 | |
| 74 | N | A | -2.3222 | |
| 75 | A | A | -1.7882 | |
| 76 | K | A | -2.6574 | |
| 77 | N | A | -2.3558 | |
| 78 | S | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.7229 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2029 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5946 | |
| 85 | S | A | -1.5018 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.9800 | |
| 88 | A | A | -2.0133 | |
| 89 | E | A | -2.5227 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.4395 | |
| 92 | A | A | -0.0850 | |
| 93 | V | A | 1.4190 | |
| 94 | Y | A | 0.5679 | |
| 95 | Y | A | 0.2053 | |
| 96 | C | A | 0.2174 | |
| 97 | N | A | -0.5121 | |
| 98 | G | A | -0.2766 | |
| 99 | R | A | -0.3764 | |
| 100 | F | A | 0.9729 | |
| 101 | T | A | 0.8544 | |
| 102 | L | A | 1.3157 | |
| 103 | G | A | 0.5433 | |
| 104 | S | A | 0.2712 | |
| 105 | W | A | 0.5736 | |
| 106 | G | A | -0.3610 | |
| 107 | Q | A | -1.2024 | |
| 108 | G | A | -0.3792 | |
| 109 | T | A | 0.4426 | |
| 110 | L | A | 2.1957 | |
| 111 | V | A | 2.7685 | |
| 112 | T | A | 1.9734 | |
| 113 | V | A | 2.1771 | |
| 114 | S | A | 0.7172 | |
| 115 | S | A | 0.0809 |