Project name: 9.39C11

Status: done

Started: 2026-07-07 07:59:35
Settings
Chain sequence(s) H: EVILVESGGGSVKPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVATISGGGGITYYADSVKGRFTISRDNAKNALYLQMSSLRSEDTALYSCARLLVLYYSMDYWGQGTSVTVSS
L: DIQMNQSPSSLSASLGDTITISCHASQNINVWLSWYQQKPGNIPKLLIYKASNLNTGVPSRFSGSGSGTGFTLTISSLQPEDIATYFCQQGQSYPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-3.1184
Maximal score value
2.8357
Average score
-0.5553
Total score value
-125.4902

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.4743
2 V H 0.0058
3 I H 1.0891
4 L H 0.0000
5 V H 0.8081
6 E H 0.0000
7 S H -0.6035
8 G H -0.9117
9 G H -0.7511
11 G H -0.4906
12 S H -0.7074
13 V H -1.2409
14 K H -2.3747
15 P H -2.2198
16 G H -1.6760
17 G H -1.3039
18 S H -1.2142
19 L H -0.9065
20 K H -1.8247
21 L H 0.0000
22 S H -0.4828
23 C H 0.0000
24 A H 0.0818
25 A H 0.0000
26 S H -0.2503
27 G H -0.6436
28 F H -0.1640
29 T H -0.2236
30 F H 0.0000
35 S H -0.7618
36 S H -0.0233
37 Y H 0.7455
38 T H 0.0000
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 T H -1.6949
46 P H -1.8025
47 E H -2.8463
48 K H -2.6378
49 R H -2.3756
50 L H 0.0000
51 E H -0.7668
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 T H 0.0000
56 I H 0.0000
57 S H 0.3996
58 G H -0.0905
59 G H -0.5918
62 G H -0.3108
63 G H 0.0657
64 I H 1.3210
65 T H 0.8019
66 Y H 0.3887
67 Y H -0.6555
68 A H 0.0000
69 D H -2.6669
70 S H -1.9861
71 V H 0.0000
72 K H -2.5925
74 G H -1.6972
75 R H -1.6991
76 F H 0.0000
77 T H -0.8218
78 I H 0.0000
79 S H -0.2881
80 R H -0.9375
81 D H -1.3218
82 N H -1.5103
83 A H -1.2388
84 K H -2.1737
85 N H -1.6147
86 A H -0.9461
87 L H 0.0000
88 Y H -0.5388
89 L H 0.0000
90 Q H -1.3844
91 M H 0.0000
92 S H -1.1107
93 S H -1.2934
94 L H 0.0000
95 R H -3.1184
96 S H -2.3559
97 E H -2.6162
98 D H 0.0000
99 T H -1.0677
100 A H 0.0000
101 L H 0.0155
102 Y H 0.0000
103 S H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 L H 0.0000
108 L H 1.9060
109 V H 2.8357
110 L H 2.7572
112 Y H 1.8376
113 Y H 1.0475
114 S H 0.7652
115 M H 0.0000
116 D H 0.2356
117 Y H 0.7873
118 W H 0.0000
119 G H 0.0000
120 Q H -0.8864
121 G H -0.4213
122 T H -0.3510
123 S H -0.3839
124 V H 0.0000
125 T H -0.9612
126 V H 0.0000
127 S H -1.5285
128 S H -1.0151
1 D L -2.3484
2 I L -2.0194
3 Q L -2.2868
4 M L 0.0000
5 N L -1.8969
6 Q L -1.3454
7 S L -1.0194
8 P L -0.7542
9 S L -0.9829
10 S L -1.1688
11 L L -0.7857
12 S L -1.1238
13 A L 0.0000
14 S L -0.4815
15 L L 0.3949
16 G L -0.2902
17 D L -0.6785
18 T L -0.5074
19 I L 0.0000
20 T L -0.2241
21 I L 0.0000
22 S L -0.7947
23 C L 0.0000
24 H L -2.1298
25 A L 0.0000
26 S L -2.0198
27 Q L -2.5730
28 N L -2.2948
29 I L 0.0000
36 N L -1.4422
37 V L -0.4338
38 W L -0.1669
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.0161
45 K L -1.5314
46 P L -1.0114
47 G L -1.3171
48 N L -1.7357
49 I L -0.5485
50 P L 0.0000
51 K L -0.8522
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3128
56 K L -0.9672
57 A L 0.0000
65 S L -0.8510
66 N L -1.1333
67 L L -0.2875
68 N L -0.3867
69 T L -0.3599
70 G L -0.4382
71 V L -0.2581
72 P L -0.3336
74 S L -0.4188
75 R L -0.6411
76 F L 0.0000
77 S L -0.5054
78 G L -0.5947
79 S L -0.7494
80 G L -0.7830
83 S L -1.0025
84 G L -1.3683
85 T L -1.5077
86 G L -1.1685
87 F L 0.0000
88 T L -0.5645
89 L L 0.0000
90 T L -0.2948
91 I L 0.0000
92 S L -0.7304
93 S L -0.5454
94 L L 0.0000
95 Q L -0.6771
96 P L -0.7936
97 E L -1.4325
98 D L 0.0000
99 I L -1.0580
100 A L 0.0000
101 T L -1.2781
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 Q L -0.5407
109 S L -0.2250
114 Y L -0.1945
115 P L -0.6105
116 W L 0.0000
117 T L -0.7946
118 F L 0.0000
119 G L 0.0000
120 G L -1.8124
121 G L 0.0000
122 T L 0.0000
123 K L -2.0716
124 L L 0.0000
125 E L -1.7370
126 I L -0.6107
127 K L -1.4113
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018