Project name: query_structure

Status: done

Started: 2026-03-16 20:40:19
Settings
Chain sequence(s) A: VKVCDICGDAGREDLLAICSGCSDGAEHTYCMREMLDEVPEGDWLCEECAEE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:26)
Show buried residues

Minimal score value
-3.7843
Maximal score value
1.621
Average score
-1.1564
Total score value
-60.1347

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6210
2 K A -0.4841
3 V A -0.3857
4 C A 0.0000
5 D A -1.1127
6 I A 1.1917
7 C A 0.5531
8 G A -0.8096
9 D A -2.1756
10 A A -1.8633
11 G A -2.5139
12 R A -3.5985
13 E A -3.7843
14 D A -3.5301
15 L A 0.0000
16 L A 0.0000
17 A A 0.0000
18 I A 0.1877
19 C A 0.0000
20 S A -0.7822
21 G A -1.0849
22 C A -0.7531
23 S A -1.0980
24 D A -2.0496
25 G A 0.0000
26 A A 0.0000
27 E A 0.0000
28 H A 0.0000
29 T A 0.0000
30 Y A 0.6072
31 C A 0.7439
32 M A -0.4882
33 R A -2.0596
34 E A -2.0337
35 M A -0.2728
36 L A -0.8738
37 D A -2.1303
38 E A -2.6003
39 V A -1.6242
40 P A -1.6974
41 E A -2.5787
42 G A -2.0860
43 D A -2.1145
44 W A -0.8047
45 L A -0.4938
46 C A 0.0000
47 E A -2.8298
48 E A -3.2395
49 C A -2.1861
50 A A -2.1718
51 E A -3.4637
52 E A -3.2648
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Laboratory of Theory of Biopolymers 2018