Project name: Leb-V85E-L154K [mutate: VE85H, LK154L]

Status: done

Started: 2025-11-18 06:31:18
Settings
Chain sequence(s) H: QVTLREESGPALVKPTQTLTLTCTVSGFSLSAYSVNWIRQPPGKALEWLAMIWGDGKIVYNSALKSRLTISKDTSKNQVVLTMTNMDPVDTATYYCAGDGYYPYAMDNWGQGSLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESK
L: DIVMTQSPDSLSVSLGERATINCRASKSVDSYGNSFMHWYQQKPGQPPKLLIYLASNLESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQNNEDPRTFGGGTKVEIKRTVAAPSVFIFPPSDEEQLKSGTASVVCLLNNFYPREAKVQQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACCEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LK154L,VE85H
Energy difference between WT (input) and mutated protein (by FoldX) -0.556728 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:08:17)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:08:40)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:35)
Show buried residues

Minimal score value
-3.5958
Maximal score value
2.1977
Average score
-0.7541
Total score value
-329.5275

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.0401
2 V H -0.1923
3 T H -0.6313
4 L H 0.0000
5 R H -2.0489
6 E H -1.3453
7 S H -0.7898
8 G H -0.3684
9 P H -0.1715
10 A H -0.2958
11 L H -0.2476
12 V H 0.0000
13 K H -2.5881
14 P H -2.3811
15 T H -2.1580
16 Q H -2.4181
17 T H -1.4910
18 L H 0.0000
19 T H -0.2037
20 L H 0.0000
21 T H -0.4428
22 C H 0.0000
23 T H -1.1339
24 V H 0.0000
25 S H -0.7176
26 G H -0.4672
27 F H 0.1039
28 S H -0.1570
29 L H 0.0000
30 S H -0.8423
31 A H -0.4352
32 Y H 0.0000
33 S H 0.0000
34 V H 0.0000
35 N H 0.0000
36 W H 0.0000
37 I H 0.0000
38 R H 0.0000
39 Q H -0.8749
40 P H -1.2674
41 P H -1.0328
42 G H -1.4393
43 K H -2.1942
44 A H -1.2125
45 L H 0.0000
46 E H -0.8030
47 W H 0.0000
48 L H 0.0000
49 A H 0.0000
50 M H 0.0000
51 I H 0.0000
52 W H -0.8901
53 G H -1.2327
54 D H -2.2426
55 G H -1.7136
56 K H -1.7094
57 I H 0.0688
58 V H 0.0000
59 Y H -0.5203
60 N H -1.1911
61 S H -1.2455
62 A H -0.5337
63 L H -0.8617
64 K H -1.8569
65 S H -1.1623
66 R H -1.2034
67 L H 0.0000
68 T H -0.2162
69 I H 0.0000
70 S H -0.2091
71 K H -1.0775
72 D H -1.5900
73 T H -1.3542
74 S H -1.4778
75 K H -2.2816
76 N H -1.5955
77 Q H -1.4511
78 V H 0.0000
79 V H 0.0827
80 L H 0.0000
81 T H -0.0303
82 M H 0.0000
82A T H -1.3215
82B N H -2.3945
82C M H 0.0000
83 D H -3.1586
84 P H -2.1709
85 E H -2.4998 mutated: VE85H
86 D H 0.0000
87 T H -0.9800
88 A H 0.0000
89 T H -0.1990
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 G H 0.0000
95 D H 0.0000
96 G H 0.6055
97 Y H 1.9247
98 Y H 2.1977
99 P H 0.0000
100 Y H 1.3389
100A A H 0.0000
100B M H 0.0000
101 D H -1.4110
102 N H -0.9171
103 W H -1.1570
104 G H 0.0000
105 Q H -1.9036
106 G H -1.2401
107 S H -0.6385
108 L H -0.1187
109 V H 0.0000
110 T H 0.0000
111 V H 0.0000
112 S H -1.0610
113 S H -0.8811
114 A H -0.5322
115 S H -0.6428
116 T H -0.6865
117 K H -1.1167
118 G H -1.3442
119 P H -0.5547
120 S H -0.3378
121 V H -0.3461
122 F H 0.0000
123 P H -1.1047
124 L H 0.0000
125 A H 0.0000
126 P H 0.0000
127 C H -0.8712
128 S H -0.8533
129 R H -1.0060
130 S H -0.9191
131 T H -0.7077
132 S H -0.8797
133 E H -1.3659
134 S H -0.9397
135 T H -0.6857
136 A H 0.0000
137 A H 0.0000
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H 0.0000
144 D H -0.2762
145 Y H 0.0000
146 F H 0.0000
147 P H 0.0000
148 E H -0.3274
149 P H -0.6386
150 V H 0.0000
151 T H -0.6792
152 V H -0.2507
153 S H -0.4711
154 W H 0.0000
155 N H -0.9267
156 S H -0.7608
157 G H -0.5697
158 A H -0.2394
159 L H -0.0678
160 T H -0.1879
161 S H -0.2118
162 G H -0.3366
163 V H 0.1332
164 H H -0.3126
165 T H -0.0178
166 F H 0.0000
167 P H -0.3534
168 A H 0.2562
169 V H 0.6966
170 L H 1.4530
171 Q H 0.4660
172 S H 0.0029
173 S H -0.1520
174 G H 0.1319
175 L H 0.2920
176 Y H 0.5893
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.1332
184 V H 0.0000
185 P H -0.5168
186 S H -0.6667
187 S H -0.6302
188 S H -0.6576
189 L H -0.7450
190 G H -1.0790
191 T H -0.9009
192 K H -1.5279
193 T H -1.5054
194 Y H 0.0000
195 T H -1.9136
196 C H 0.0000
197 N H -1.6352
198 V H 0.0000
199 D H -2.0748
200 H H 0.0000
201 K H -2.7562
202 P H -1.5298
203 S H -1.7918
204 N H -2.6021
205 T H -2.0949
206 K H -2.7492
207 V H -1.4995
208 D H -2.6596
209 K H -2.1562
210 R H -2.8576
211 V H 0.0000
212 E H -2.7569
213 S H -1.8363
214 K H -2.5749
1 D L -2.3837
2 I L 0.0000
3 V L 0.6563
4 M L 0.0000
5 T L -0.9073
6 Q L -1.6679
7 S L -1.6126
8 P L -1.4196
9 D L -2.2001
10 S L -1.1408
11 L L -0.6320
12 S L -0.4595
13 V L -0.9402
14 S L -0.9145
15 L L 0.0622
16 G L -0.9660
17 E L -2.2960
18 R L -2.5745
19 A L 0.0000
20 T L -0.7347
21 I L 0.0000
22 N L -1.9529
23 C L 0.0000
24 R L -2.4337
25 A L 0.0000
26 S L -1.2063
27 K L -2.3754
27A S L -1.9175
27B V L 0.0000
27C D L -1.3034
27D S L -0.4389
28 Y L 0.6249
29 G L -0.5068
30 N L -0.9974
31 S L 0.0000
32 F L -0.5166
33 M L 0.0000
34 H L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.7043
40 P L -1.4009
41 G L -1.5732
42 Q L -2.0033
43 P L -1.5139
44 P L 0.0000
45 K L -1.9237
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L 0.1862
50 L L 0.0903
51 A L 0.0000
52 S L -0.6126
53 N L -0.7145
54 L L -0.4361
55 E L -0.9993
56 S L -0.7592
57 G L -0.8332
58 V L 0.0000
59 P L -1.1946
60 D L -2.0563
61 R L -1.5917
62 F L 0.0000
63 S L -0.7982
64 G L -0.5243
65 S L -0.9315
66 G L -1.2994
67 S L -1.3531
68 G L -1.5596
69 T L -1.8820
70 D L -2.3160
71 F L 0.0000
72 T L -1.1708
73 L L 0.0000
74 T L -0.7301
75 I L 0.0000
76 S L -1.7250
77 S L -1.3857
78 L L 0.0000
79 Q L -1.3560
80 A L -1.7168
81 E L -2.4965
82 D L 0.0000
83 V L 0.0000
84 A L 0.0000
85 V L -0.3067
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 N L -1.2148
92 N L -2.0106
93 E L -3.4834
94 D L -3.1518
95 P L 0.0000
96 R L 0.0000
97 T L -0.5712
98 F L 0.2107
99 G L 0.0000
100 G L -0.9270
101 G L -1.0657
102 T L 0.0000
103 K L -0.7534
104 V L 0.0000
105 E L -0.9777
106 I L 0.0000
107 K L -1.1963
108 R L -0.6549
109 T L 0.0967
110 V L 0.7203
111 A L 0.1094
112 A L -0.0557
113 P L 0.0000
114 S L -0.2397
115 V L 0.0000
116 F L 0.0000
117 I L 0.0000
118 F L 0.0000
119 P L 0.0000
120 P L 0.0000
121 S L 0.0000
122 D L -3.1529
123 E L -3.0344
124 Q L 0.0000
125 L L -2.2620
126 K L -2.8378
127 S L -1.7324
128 G L -1.2109
129 T L -1.0475
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.9756
139 F L 0.0000
140 Y L 0.0000
141 P L -1.6814
142 R L -3.0553
143 E L -3.2671
144 A L -2.3790
145 K L -2.4388
146 V L -1.0924
147 Q L -1.1379
148 W L 0.0000
149 K L -1.7752
150 V L 0.0000
151 D L -2.2146
152 N L -2.2935
153 A L -1.7841
154 K L -2.4588 mutated: LK154L
155 Q L -1.8126
156 S L -1.3763
157 G L -1.2086
158 N L -1.5287
159 S L -1.3198
160 Q L -1.1535
161 E L -1.6364
162 S L -0.7148
163 V L -0.7871
164 T L -1.0834
165 E L -2.0820
166 Q L 0.0000
167 D L -2.1938
168 S L -2.4654
169 K L -2.6981
170 D L -1.9522
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.6468
179 L L 0.0000
180 T L -0.6957
181 L L 0.0000
182 S L -1.1492
183 K L -2.0983
184 A L -1.9401
185 D L -2.7024
186 Y L 0.0000
187 E L -3.4731
188 K L -3.5958
189 H L -2.8515
190 K L -2.7902
191 V L -1.0773
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.8141
196 V L 0.0000
197 T L -1.2227
198 H L 0.0000
199 Q L -1.6758
200 G L -0.3030
201 L L -0.2057
202 S L -0.4827
203 S L -0.4274
204 P L -0.5583
205 V L -0.0027
206 T L -0.4358
207 K L -0.6816
208 S L -0.4570
209 F L 0.0000
210 N L -1.3224
211 R L -2.2193
212 G L -1.8611
213 E L -2.2596
214 C L -0.5498
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Laboratory of Theory of Biopolymers 2018